Miyakogusa Predicted Gene
- Lj4g3v2238990.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2238990.1 tr|I1LYF8|I1LYF8_SOYBN tRNA pseudouridine
synthase (Fragment) OS=Glycine max PE=3 SV=1,86.99,0,hisT_truA: tRNA
pseudouridine(38-40) synthase,Pseudouridine synthase I, TruA;
PSEUDOURIDYLATE SYNTHA,CUFF.50549.1
(822 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS351602 similar to UniRef100_A7NVZ5 Cluster: Pseudouri... 597 e-170
gnl|LJGI|TC82122 similar to UniRef100_A5BHS7 Cluster: Pseudourid... 280 1e-74
gnl|LJGI|AV424426 107 1e-22
>gnl|LJGI|FS351602 similar to UniRef100_A7NVZ5 Cluster: Pseudouridylate synthase; n=1;
Vitis vinifera|Rep: Pseudouridylate synthase - Vitis
vinifera (Grape), partial (39%)
Length = 821
Score = 597 bits (301), Expect = e-170
Identities = 301/301 (100%)
Strand = Plus / Minus
Query: 1 atggttatttatacttcagggtggcaatatcagatgtctcccccaactgtacaatgcgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atggttatttatacttcagggtggcaatatcagatgtctcccccaactgtacaatgcgtt 328
Query: 61 gtggaaagagctttaactcgagcaacaaagcttcaaaggaaggatctctgtttggttggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtggaaagagctttaactcgagcaacaaagcttcaaaggaaggatctctgtttggttggt 268
Query: 121 gcaagcaggactgatgctggagtccatgcctggggtcaggttgcacattttgttactcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gcaagcaggactgatgctggagtccatgcctggggtcaggttgcacattttgttactcca 208
Query: 181 tttaactatgacaagttagaagatattcatgcagctttgaatggtcttcttccttccgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tttaactatgacaagttagaagatattcatgcagctttgaatggtcttcttccttccgat 148
Query: 241 atccgagtcagagaaatcagccctgttccagaagaattccatgctcggttttcggccaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 atccgagtcagagaaatcagccctgttccagaagaattccatgctcggttttcggccaaa 88
Query: 301 a 301
|
Sbjct: 87 a 87
Score = 170 bits (86), Expect = 9e-42
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 393 tgctgttatgagagaagctgcacaatattatgttgggaagcataatttctctgcttttgc 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tgctgttatgagagaagctgcacaatattatgttgggaagcataatttctctgcttttgc 27
Query: 453 aaacgcatcccacaatgatggggtac 478
||||||||||||||||||||||||||
Sbjct: 26 aaacgcatcccacaatgatggggtac 1
>gnl|LJGI|TC82122 similar to UniRef100_A5BHS7 Cluster: Pseudouridylate synthase; n=1;
Vitis vinifera|Rep: Pseudouridylate synthase - Vitis
vinifera (Grape), partial (13%)
Length = 641
Score = 280 bits (141), Expect = 1e-74
Identities = 156/161 (96%)
Strand = Plus / Plus
Query: 582 catggcggctttgttggttcaaattggcaaggaagctctccctcctgatattattcaaca 641
||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct: 416 catggtggctttgttggttcaaattggcaaggaagctctccctcatgacattgttcaaca 475
Query: 642 tattttggcgagtcgtgatcgcaaggaacttgcaaaatacgccttgtttgctccacctca 701
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 476 tattttggcgagtcgtgatcgcaaggaacttgcaaaatatgccttgtttgctccacctca 535
Query: 702 tggcctttgtcttgtttctatcaactataatgaaagtcacc 742
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tggcctttgtcttgtttctatcaactataatgaaagtcacc 576
Score = 65.9 bits (33), Expect = 4e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 774 ttttggtaggcatcatacaataagaaagtgcaaggttccattcta 818
||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 588 ttttggtagaaatcatacaataagacagtgcaaggttccattcta 632
>gnl|LJGI|AV424426
Length = 234
Score = 107 bits (54), Expect = 1e-22
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 769 aacagttttggtaggcatcatacaataagaaagtgcaaggttccattctattga 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 aacagttttggtaggcatcatacaataagaaagtgcaaggttccattctattga 181