Miyakogusa Predicted Gene
- Lj4g3v2214800.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2214800.1 tr|G7JS69|G7JS69_MEDTR Auxin response factor
OS=Medicago truncatula GN=MTR_4g124900 PE=4 SV=1,80.23,0,B3,B3 DNA
binding domain; IAA_ARF,Aux/IAA-ARF-dimerisation; B3 DNA binding
domain,B3 DNA binding dom,CUFF.50463.1
(3429 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO032004 similar to UniRef100_A7PDS6 Cluster: Chromosom... 971 0.0
gnl|LJGI|AV409033 homologue to UniRef100_Q6L8U3 Cluster: Auxin r... 823 0.0
gnl|LJGI|TC75228 similar to UniRef100_A7PDS6 Cluster: Chromosome... 295 9e-79
gnl|LJGI|BP055405 weakly similar to UniRef100_Q8RYC8 Cluster: Au... 206 7e-52
gnl|LJGI|TC60159 similar to UniRef100_Q8RYC8 Cluster: Auxin resp... 133 8e-30
gnl|LJGI|BP056523 similar to UniRef100_A7PDS6 Cluster: Chromosom... 84 7e-15
gnl|LJGI|TC81270 similar to UniRef100_A7NSY4 Cluster: Chromosome... 70 1e-10
gnl|LJGI|BP042557 homologue to UniRef100_A7PJQ8 Cluster: Chromos... 68 4e-10
gnl|LJGI|BW599506 similar to UniRef100_A1VH83 Cluster: Molybdate... 62 2e-08
gnl|LJGI|TC77698 62 2e-08
gnl|LJGI|TC70342 weakly similar to UniRef100_Q6L8U3 Cluster: Aux... 62 2e-08
gnl|LJGI|TC61640 similar to UniRef100_A7PTN8 Cluster: Chromosome... 62 2e-08
gnl|LJGI|AV410062 homologue to UniRef100_A7Q186 Cluster: Chromos... 58 4e-07
gnl|LJGI|TC61200 similar to UniRef100_A2Q532 Cluster: Transcript... 58 4e-07
gnl|LJGI|BP073689 56 2e-06
gnl|LJGI|TC82003 similar to UniRef100_A3F771 Cluster: Auxin resp... 56 2e-06
>gnl|LJGI|GO032004 similar to UniRef100_A7PDS6 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 499
Score = 971 bits (490), Expect = 0.0
Identities = 496/498 (99%)
Strand = Plus / Plus
Query: 2408 ctacacttacagatggagatgccccatcatgctcaacctctccatctactaataactgcc 2467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctacacttacagatggagatgccccatcatgctcaacctctccatctactaataactgcc 61
Query: 2468 agatatctccatcaaatctcctgaaaagaaatcaacaagtacctgctacattagggggta 2527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 agatatctccatcaaatctcctgaaaagaaatcaacaagtacctgctacattagggggta 121
Query: 2528 gtttggtagtggagtccactagtaatctgatacaggagcttcagagtaagtctgacatgc 2587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gtttggtagtggagtccactagtaatctgatacaggagcttcagagtaagtctgacatgc 181
Query: 2588 agataaaaaatgagttctcaaatgtgaaagggtttgaccagcttaagtataaagggacaa 2647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 agataaaaaatgagttctcaaatgtgaaagggtttgaccagcttaagtataaagggacaa 241
Query: 2648 tcactgatcagatggaagcttcttcttctggaacatcttactgtcttgatcctggtaatg 2707
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 242 tcactgatcagatggaagcttcttcttctgaaacatcttactgtcttgatcctggtaatg 301
Query: 2708 tccagcagagcttaccactttccaacttttgtatggaaggggatgtccaatcacactcta 2767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tccagcagagcttaccactttccaacttttgtatggaaggggatgtccaatcacactcta 361
Query: 2768 gaagcaatctaccatttgactctaatcttgatggtctaacgcctgatcctgtgcttatga 2827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaagcaatctaccatttgactctaatcttgatggtctaacgcctgatcctgtgcttatga 421
Query: 2828 gggggtatgattctcagaaagatcttcaaaacatgttgtctaattatggtggtgccccga 2887
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gggggtatgactctcagaaagatcttcaaaacatgttgtctaattatggtggtgccccga 481
Query: 2888 gagacattgaaactgagc 2905
||||||||||||||||||
Sbjct: 482 gagacattgaaactgagc 499
>gnl|LJGI|AV409033 homologue to UniRef100_Q6L8U3 Cluster: Auxin response factor 1;
n=1; Cucumis sativus|Rep: Auxin response factor 1 -
Cucumis sativus (Cucumber), partial (13%)
Length = 418
Score = 823 bits (415), Expect = 0.0
Identities = 415/415 (100%)
Strand = Plus / Plus
Query: 20 gttacttgccaaattctggtgaaggggaaaggaagaccatcaattcagaattatggcatg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gttacttgccaaattctggtgaaggggaaaggaagaccatcaattcagaattatggcatg 63
Query: 80 cttgtgctggacctttggtttctttgcctcctgttggaagtcttgtggtttacttcccgc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cttgtgctggacctttggtttctttgcctcctgttggaagtcttgtggtttacttcccgc 123
Query: 140 aaggacacagtgagcaagttgcagcttccatgcaaaaggagactgacttcatacccagtt 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aaggacacagtgagcaagttgcagcttccatgcaaaaggagactgacttcatacccagtt 183
Query: 200 accctaaccttccctccaagttgatttgcatgcttcacaatgttgcgctgcatgctgatc 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 accctaaccttccctccaagttgatttgcatgcttcacaatgttgcgctgcatgctgatc 243
Query: 260 ctgaaactgacgaagtctatgcacaaatgacccttcagcctgtaaacaaatatgataagg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctgaaactgacgaagtctatgcacaaatgacccttcagcctgtaaacaaatatgataagg 303
Query: 320 atgcaatactggcatcagacatgggtctcaaacaaaaccgacaacctacagagttctttt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atgcaatactggcatcagacatgggtctcaaacaaaaccgacaacctacagagttctttt 363
Query: 380 gcaaaactcttacagctagtgatacaagcactcatggtggattttctgtgcctcg 434
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gcaaaactcttacagctagtgatacaagcactcatggtggattttctgtgcctcg 418
>gnl|LJGI|TC75228 similar to UniRef100_A7PDS6 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 698
Score = 295 bits (149), Expect = 9e-79
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 3281 tactgtcatatactgaggtgcagcaaatgagcttggatggagatttaggtaacgttccaa 3340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tactgtcatatactgaggtgcagcaaatgagcttggatggagatttaggtaacgttccaa 60
Query: 3341 tccccaatcaagcttgcagtggcacagacagtggcaatgcatggaggggaccgtatgatg 3400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tccccaatcaagcttgcagtggcacagacagtggcaatgcatggaggggaccgtatgatg 120
Query: 3401 ataactctgcagcctcgtttaatagataa 3429
|||||||||||||||||||||||||||||
Sbjct: 121 ataactctgcagcctcgtttaatagataa 149
>gnl|LJGI|BP055405 weakly similar to UniRef100_Q8RYC8 Cluster: Auxin response factor 19;
n=2; Arabidopsis thaliana|Rep: Auxin response factor 19 -
Arabidopsis thaliana (Mouse-ear cress), partial (7%)
Length = 512
Score = 206 bits (104), Expect = 7e-52
Identities = 180/206 (87%)
Strand = Plus / Minus
Query: 1011 ggatgaatcaacagctggtgagcgcccgagcagagtttcaatttgggaaattgaaccagt 1070
||||||||||||| ||||||||| || |||||||||||||||||| |||||||||| ||
Sbjct: 406 ggatgaatcaacaactggtgagcaccnaagcagagtttcaatttggtaaattgaaccggt 347
Query: 1071 agtgactcctttctatatttgtccacctccattttttaggcctaagtttcccagacaacc 1130
|||||||||||||||| || |||||||| |||||| ||||| |||||||| | | |||
Sbjct: 346 agtgactcctttctatggttatccacctctatttttaaggcccaagtttccatggcnacc 287
Query: 1131 aggaatgccagatgacgagtctgatatagaaaatgcttttaagagagctatgccatggct 1190
||||||||||||||| |||| |||| ||||||||||||| ||||||||| ||||||||||
Sbjct: 286 aggaatgccagatgatgagtatgatttagaaaatgctttcaagagagctgtgccatggct 227
Query: 1191 tggggatgactttggcatgaaggatg 1216
|| | || ||||| |||||||||||
Sbjct: 226 tgaaggtggctttgtcatgaaggatg 201
>gnl|LJGI|TC60159 similar to UniRef100_Q8RYC8 Cluster: Auxin response factor 19; n=2;
Arabidopsis thaliana|Rep: Auxin response factor 19 -
Arabidopsis thaliana (Mouse-ear cress), partial (3%)
Length = 1684
Score = 133 bits (67), Expect = 8e-30
Identities = 94/103 (91%)
Strand = Plus / Plus
Query: 1039 agcagagtttcaatttgggaaattgaaccagtagtgactcctttctatatttgtccacct 1098
|||||||||||||||||| ||||||||||||||||||||| ||||||| || |||||||
Sbjct: 1030 agcagagtttcaatttggtaaattgaaccagtagtgactcatttctatggttatccacct 1089
Query: 1099 ccattttttaggcctaagtttcccagacaaccaggaatgccag 1141
|||||||| ||||| |||||||| || ||||||||||||||||
Sbjct: 1090 ccatttttaaggcccaagtttccaaggcaaccaggaatgccag 1132
Score = 125 bits (63), Expect = 2e-27
Identities = 117/133 (87%), Gaps = 4/133 (3%)
Strand = Plus / Plus
Query: 1008 atgggatgaatcaacagctggtgagcgcccgagcagagtttcaatttgggaaattgaacc 1067
|||||||| ||||||| ||||||||| || ||||||||||||||||| |||||||||
Sbjct: 887 atgggatggatcaacaactggtgagcacca-agcagagtttcaatttg---aattgaacc 942
Query: 1068 agtagtgactcctttctatatttgtccacctccattttttaggcctaagtttcccagaca 1127
||||||||||| ||||||| || ||||||||||||||| ||||| |||||||| || ||
Sbjct: 943 agtagtgactcatttctatggttatccacctccatttttaaggcccaagtttccaaggca 1002
Query: 1128 accaggaatgcca 1140
|||||||||||||
Sbjct: 1003 accaggaatgcca 1015
>gnl|LJGI|BP056523 similar to UniRef100_A7PDS6 Cluster: Chromosome chr11 scaffold_13
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:,
partial (2%)
Length = 546
Score = 83.8 bits (42), Expect = 7e-15
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 1 atgaaggctccatccaattgttacttgccaaattctggtgaaggggaaaggaagaccatc 60
||||||||||| ||||| | |||||||| |||||||||||||| |||||||||| ||||
Sbjct: 473 atgaaggctcctcccaatggctacttgcctaattctggtgaaggagaaaggaagagcatc 532
Query: 61 aattcagaattatg 74
|||||||| |||||
Sbjct: 533 aattcagagttatg 546
>gnl|LJGI|TC81270 similar to UniRef100_A7NSY4 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 786
Score = 69.9 bits (35), Expect = 1e-10
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 3187 tggaaattggtatatgtagatcatgaaaatgacattcttcttgttggtgatgacccttgg 3246
||||||||||| ||||||||| |||| | ||| |||| ||||| |||||||| ||||||
Sbjct: 154 tggaaattggtgtatgtagattatgagagtgatgttctacttgtaggtgatgatccttgg 213
Query: 3247 gaagaatttgt 3257
|||||||||||
Sbjct: 214 gaagaatttgt 224
>gnl|LJGI|BP042557 homologue to UniRef100_A7PJQ8 Cluster: Chromosome chr12
scaffold_18, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_18, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (22%)
Length = 545
Score = 67.9 bits (34), Expect = 4e-10
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 397 agtgatacaagcactcatggtggattttctgtgcctcgtagagcagctga 446
|||||||| ||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 86 agtgataccagcactcatggaggattttctgttcctcgaagagcagctga 135
Score = 63.9 bits (32), Expect = 6e-09
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 721 agtgacagcatgcacattggcattcttgctgcagcagctcatgc 764
||||| ||||||||||||||| |||||||||| |||||||||||
Sbjct: 410 agtgatagcatgcacattggccttcttgctgctgcagctcatgc 453
>gnl|LJGI|BW599506 similar to UniRef100_A1VH83 Cluster: Molybdate ABC transporter, inner
membrane subunit precursor; n=1; Desulfovibrio vulgaris
subsp. vulgaris DP4|Rep: Molybdate ABC transporter, inner
membrane subunit precursor - Desulfovibrio vulgaris
subsp. vulgaris (strain DP4), partial (6%)
Length = 488
Score = 61.9 bits (31), Expect = 2e-08
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 1915 tccctaccacaagaatcgcaatttctgcaacaaatcgaccagcaagc 1961
||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct: 442 tccctaccagaagaatcaaaaattctgcaacaaatcgaccagcaagc 488
>gnl|LJGI|TC77698
Length = 603
Score = 61.9 bits (31), Expect = 2e-08
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 1158 agaaaatgcttttaagagagctatgccatggcttggggatgactttggcatgaaggatgc 1217
|||||||||||| ||||||| | || |||| |||| |||| ||||||||||||||||||
Sbjct: 114 agaaaatgctttcaagagagttgtgtcatgacttgaagatggctttggcatgaaggatgc 173
Query: 1218 ctcaggttcaatctt 1232
||| ||||| ||||
Sbjct: 174 atcaagttcagtctt 188
>gnl|LJGI|TC70342 weakly similar to UniRef100_Q6L8U3 Cluster: Auxin response factor 1;
n=1; Cucumis sativus|Rep: Auxin response factor 1 -
Cucumis sativus (Cucumber), partial (3%)
Length = 1324
Score = 61.9 bits (31), Expect = 2e-08
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 1158 agaaaatgcttttaagagagctatgccatggcttggggatgactttggcatgaaggatgc 1217
|||||||||||| ||||||| | || |||| |||| |||| ||||||||||||||||||
Sbjct: 912 agaaaatgctttcaagagagttgtgtcatgacttgaagatggctttggcatgaaggatgc 971
Query: 1218 ctcaggttcaatctt 1232
||| ||||| ||||
Sbjct: 972 atcaagttcagtctt 986
>gnl|LJGI|TC61640 similar to UniRef100_A7PTN8 Cluster: Chromosome undetermined
scaffold_30, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_30, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (22%)
Length = 730
Score = 61.9 bits (31), Expect = 2e-08
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 73 tggcatgcttgtgctggacctttggtttctttgcctcctgttggaagtcttgtggtttac 132
|||||||| |||||||| ||| ||||||| ||||||| ||||||| | ||| || |||
Sbjct: 491 tggcatgcatgtgctggccctctggtttccctgcctcccattggaagccgtgtagtctac 550
Query: 133 ttcccgcaaggacacagtgagcaagttgcagcttc 167
|| || ||||| ||||||||||| ||||| |||||
Sbjct: 551 tttccccaaggtcacagtgagcaggttgctgcttc 585
>gnl|LJGI|AV410062 homologue to UniRef100_A7Q186 Cluster: Chromosome chr10
scaffold_43, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr10 scaffold_43, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (17%)
Length = 435
Score = 58.0 bits (29), Expect = 4e-07
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 394 gctagtgatacaagcactcatggtggattttctgtgcctcg 434
|||||||| |||||||||||||| ||||| |||||||||||
Sbjct: 306 gctagtgacacaagcactcatgggggattctctgtgcctcg 346
>gnl|LJGI|TC61200 similar to UniRef100_A2Q532 Cluster: Transcriptional factor B3; Auxin
response factor; n=1; Medicago truncatula|Rep:
Transcriptional factor B3; Auxin response factor -
Medicago truncatula (Barrel medic), partial (37%)
Length = 1325
Score = 58.0 bits (29), Expect = 4e-07
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 406 agcactcatggtggattttctgtgcctcgtagagcagctga 446
||||||||||||||||| |||||||||||| |||| |||||
Sbjct: 1047 agcactcatggtggattctctgtgcctcgtcgagctgctga 1087
>gnl|LJGI|BP073689
Length = 429
Score = 56.0 bits (28), Expect = 2e-06
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 1158 agaaaatgcttttaagagagctatgccatggcttggggatgactttggcatgaaggatgc 1217
|||||||||||| ||||||| | || |||| |||| |||| ||||||||||||||||||
Sbjct: 398 agaaaatgctttcaagagagttgtgtcatgacttgaagatggctttggcatgaaggatgc 339
>gnl|LJGI|TC82003 similar to UniRef100_A3F771 Cluster: Auxin response factor 8; n=1;
Ipomoea nil|Rep: Auxin response factor 8 - Ipomoea nil
(Japanese morning glory) (Pharbitis nil), partial (4%)
Length = 1468
Score = 56.0 bits (28), Expect = 2e-06
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 73 tggcatgcttgtgctggacctttggtttctttgcctcctgttggaagt 120
|||| ||| |||||||| ||| |||||||| |||||||||||||||||
Sbjct: 524 tggcctgcatgtgctggccctctggtttctctgcctcctgttggaagt 571