Miyakogusa Predicted Gene
- Lj4g3v2180370.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2180370.2 tr|A9RV94|A9RV94_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_161188,37.1,6e-18,RNA_pol_Rpc4,RNA polymerase III Rpc4;
seg,NULL; SUBFAMILY NOT NAMED,NULL; DNA-DIRECTED RNA
POLYMERAS,CUFF.50439.2
(891 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS334366 similar to UniRef100_A7PDY9 Cluster: Chromosom... 1237 0.0
gnl|LJGI|GO023386 similar to UniRef100_A7QUY2 Cluster: Chromosom... 52 6e-06
gnl|LJGI|TC59586 similar to UniRef100_A7PDY9 Cluster: Chromosome... 52 6e-06
>gnl|LJGI|FS334366 similar to UniRef100_A7PDY9 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (33%)
Length = 704
Score = 1237 bits (624), Expect = 0.0
Identities = 627/628 (99%)
Strand = Plus / Plus
Query: 1 atggatttaggatcatccaaagatgctcctggcggtggtggaagaaggaaggtgaagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 atggatttaggatcatccaaagatgctcctggcggtggtggaagaaggaaggtgaagttt 136
Query: 61 gcaccaagagcaccgccccgtcgagtgaagaaagaagaagttaaatctgaagttgttgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gcaccaagagcaccgccccgtcgagtgaagaaagaagaagttaaatctgaagttgttgag 196
Query: 121 gatactgatgcaaatgtggctaaggatctcctccggcgtcttaatgagggtaaattaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gatactgatgcaaatgtggctaaggatctcctccggcgtcttaatgagggtaaattaagg 256
Query: 181 cacaaagttgagaaaaaagtgtcaggttcacaaattgcttttggtgatggaggagtagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cacaaagttgagaaaaaagtgtcaggttcacaaattgcttttggtgatggaggagtagca 316
Query: 241 tcttctatcaaatcctatggatttcccaggggtgggagcagtgccagcgacggccaaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcttctatcaaatcctatggatttcccaggggtgggagcagtgccagcgacggccaaaat 376
Query: 301 tcagaattcaatggtaagccgcagaaagagtacaaagaaccatgggactattacagtgaa 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tcagaattcaatggtaagctgcagaaagagtacaaagaaccatgggactattacagtgaa 436
Query: 361 tatccaacaactcttcctttgaggagaccatattcaggaaacccagaatatcttgatgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tatccaacaactcttcctttgaggagaccatattcaggaaacccagaatatcttgatgag 496
Query: 421 gaagaatttggggaggctgcagaatccagaacttatgatgaagattcagcaaattcagca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaagaatttggggaggctgcagaatccagaacttatgatgaagattcagcaaattcagca 556
Query: 481 gtggagctaggccttttggaggaaaacccagagacaagtatgttcttgatgcgtttacca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtggagctaggccttttggaggaaaacccagagacaagtatgttcttgatgcgtttacca 616
Query: 541 actttgcctatccctaaacaatctgctactgctggagggaaaggtgataatggaaacaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 actttgcctatccctaaacaatctgctactgctggagggaaaggtgataatggaaacaac 676
Query: 601 actaaacgtcctgaaggttcaaaagatg 628
||||||||||||||||||||||||||||
Sbjct: 677 actaaacgtcctgaaggttcaaaagatg 704
>gnl|LJGI|GO023386 similar to UniRef100_A7QUY2 Cluster: Chromosome chr16 scaffold_182,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_182, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 763
Score = 52.0 bits (26), Expect = 6e-06
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 370 actcttcctttgaggagaccatattcaggaaacccagaatatcttgatgaggaagaattt 429
|||||||||||||| | || |||| ||| | |||||| |||||||||||||||||||
Sbjct: 585 actcttcctttgagaaagcccaattctggagatccagaaattcttgatgaggaagaattt 644
Query: 430 ggggag 435
||||||
Sbjct: 645 ggggag 650
>gnl|LJGI|TC59586 similar to UniRef100_A7PDY9 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 768
Score = 52.0 bits (26), Expect = 6e-06
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 370 actcttcctttgaggagaccatattcaggaaacccagaatatcttgatgaggaagaattt 429
|||||||||||||| | || |||| ||| | |||||| |||||||||||||||||||
Sbjct: 587 actcttcctttgagaaagcccaattctggagatccagaaattcttgatgaggaagaattt 646
Query: 430 ggggag 435
||||||
Sbjct: 647 ggggag 652