Miyakogusa Predicted Gene
- Lj4g3v2179300.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2179300.1 tr|Q6WG36|Q6WG36_PEA RPA 70kDa subunit OS=Pisum
sativum PE=2 SV=1,78.08,0,rpa1: replication factor-a protein 1
(rpa1),Replication factor-a protein 1 Rpa1; REPLICATION FACTOR
,CUFF.50468.1
(1875 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57610 similar to UniRef100_Q6WG36 Cluster: RPA 70kDa ... 345 6e-94
gnl|LJGI|TC67590 similar to UniRef100_Q6WG36 Cluster: RPA 70kDa ... 323 2e-87
gnl|LJGI|BP084026 64 3e-09
>gnl|LJGI|TC57610 similar to UniRef100_Q6WG36 Cluster: RPA 70kDa subunit; n=1; Pisum
sativum|Rep: RPA 70kDa subunit - Pisum sativum (Garden
pea), partial (35%)
Length = 937
Score = 345 bits (174), Expect = 6e-94
Identities = 312/358 (87%)
Strand = Plus / Plus
Query: 427 aatgcaagttgtaatatgcagaatttcaagcctactgttcaacctccataccaaccacca 486
||||||||| |||| |||||||||||| || || |||||||| |||||||||||||
Sbjct: 580 aatgcaagtcataatgtgcagaatttcagaccaacggttcaaccggcataccaaccacct 639
Query: 487 ccattttacaaaggtcatggtgcgattgtgagaaatgaggccccagcacgtgttattcca 546
|| |||||||||||| |||||||||||||| ||||||||| || ||||| || |||||
Sbjct: 640 cctgtttacaaaggtcgtggtgcgattgtgaaaaatgaggcaccggcacgcgtcattcct 699
Query: 547 atagctgctttaaacccttatcaaggtcggtgggctatcaaagcaagggtaactgcaaaa 606
|| ||||||||||| |||||||||||| ||||||||||||| ||||||||||| || |||
Sbjct: 700 attgctgctttaaatccttatcaaggtaggtgggctatcaaggcaagggtaacagctaaa 759
Query: 607 ggggatctgcgccgctataataatgctaagggagatggaaaagtcttctcatttgatctc 666
||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 760 ggggatctgcgccgctataataatgctcgtggagatgggaaagtcttctcgtttgatctt 819
Query: 667 cttgacgctgatggaggtgaaatacgagtaacttgctttaacacggctgttgatcgtttc 726
||||| ||||||||||||||||||||||||| |||||||| | | |||||||| |||
Sbjct: 820 cttgattctgatggaggtgaaatacgagtaacatgctttaattctgtagttgatcgcttc 879
Query: 727 tatgatgtaatagaggttggtagagtttacttgatatccagaggtaacttgaaacctg 784
|||||| ||| |||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 880 tatgattcaattgaggctggtaaagtttacttgatatccagaggtagcttgaaacctg 937
Score = 105 bits (53), Expect = 1e-21
Identities = 158/193 (81%)
Strand = Plus / Plus
Query: 107 agcagcaggagcggtaccgcattctgctttccgacgccgtttcctctcagcaagccatgc 166
|||||||| || ||||||| || |||| || ||||||||||| ||||| ||||||||||
Sbjct: 272 agcagcagcagaggtaccgtgttgtgctctctgacgccgtttcgtctcaccaagccatgc 331
Query: 167 tcgccactcagctcaacgatcaactccgagccggactagtcaagagaggttcaatcgttc 226
||||| |||||||||| || || ||||| ||| | ||| |||| ||||| ||||||
Sbjct: 332 tcgccgctcagctcaatgaccatgtccgaaacggccgagtgaagaagggttccgtcgttc 391
Query: 227 aactgatcgagtatatttgcagtcctattcagaatcgcaagataatcgtggtgctcaaca 286
| || ||||| ||||| ||| | || | |||||||||||||| || |||||||| ||||
Sbjct: 392 agcttatcgattatatatgctctactctccagaatcgcaagattattgtggtgcttaaca 451
Query: 287 tggaaactataat 299
|||||||||||||
Sbjct: 452 tggaaactataat 464
>gnl|LJGI|TC67590 similar to UniRef100_Q6WG36 Cluster: RPA 70kDa subunit; n=1; Pisum
sativum|Rep: RPA 70kDa subunit - Pisum sativum (Garden
pea), partial (20%)
Length = 630
Score = 323 bits (163), Expect = 2e-87
Identities = 301/347 (86%)
Strand = Plus / Plus
Query: 1513 tggcaatgtgataggtgcaaccaagagtttgatgaatgtgactaccgctatcttctccaa 1572
|||||||||||||| ||||||||||||||||| || ||||||||||| || |||||||||
Sbjct: 17 tggcaatgtgatagatgcaaccaagagtttgaggagtgtgactaccggtaccttctccaa 76
Query: 1573 gctcaaattctggatcatactggaataacctgggtaactgctttccaggaaacaggggaa 1632
|||||||| |||||||| || ||| |||| ||||||||||||||||||||| ||||||||
Sbjct: 77 gctcaaatcctggatcacacaggattaacttgggtaactgctttccaggaagcaggggaa 136
Query: 1633 gagattatgggttaccctgcaaaggagctgtacatgttgaagtatgaacagcaggatgat 1692
||||||||||| | | | ||||||||| ||||| | ||||| ||||| ||||||||||
Sbjct: 137 gagattatggggtgctccgcaaaggagttgtacttcttgaaaaatgaagagcaggatgac 196
Query: 1693 gagaagtttgctggaataatcaagagtagactcttcaaccaatttgttttcaggctgaaa 1752
|| | ||||| | |||||||||||||| |||||||||||| ||||| |||| |||||||
Sbjct: 197 gacaggtttggagaaataatcaagagtaaactcttcaaccattttgtattcaagctgaaa 256
Query: 1753 atcaaagaggaattgtatggtgatgaacagagggtgaaggtcacagtaatgaaggcaggt 1812
|| ||||||||||| |||||||| ||||||| ||||||| | ||||| | ||||||| |
Sbjct: 257 ataaaagaggaattatatggtgacgaacagaaggtgaagattacagtggtcaaggcagat 316
Query: 1813 gaggtgagttactcttcagagagtggttacatgcttgatttgatttc 1859
|||||| ||| |||||||||||| | ||||||||||||||||||||
Sbjct: 317 caggtgaattattcttcagagagtagatacatgcttgatttgatttc 363
>gnl|LJGI|BP084026
Length = 379
Score = 63.9 bits (32), Expect = 3e-09
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 722 gtttctatgatgtaatagaggttggtagagtttacttgat 761
||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 127 gtttctatgatgtaatagatgttagtagagtttacttgat 88
Score = 54.0 bits (27), Expect = 3e-06
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 750 agtttacttgatatccagaggtaacttgaaacctg 784
|||||||||||||| || |||||||||||||||||
Sbjct: 68 agtttacttgatatacacaggtaacttgaaacctg 34