Miyakogusa Predicted Gene

Lj4g3v2172480.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v2172480.1 Non Chatacterized Hit- tr|C5YA72|C5YA72_SORBI
Putative uncharacterized protein Sb06g019250
OS=Sorghu,58.11,2e-18,CRM,RNA-binding, CRM domain; no
description,RNA-binding, CRM domain; CRS1_YhbY,RNA-binding, CRM
doma,CUFF.50380.1
         (1782 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC74786 similar to UniRef100_A7PE67 Cluster: Chromosome...   866   0.0  

>gnl|LJGI|TC74786 similar to UniRef100_A7PE67 Cluster: Chromosome chr11 scaffold_13,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr11 scaffold_13, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (11%)
          Length = 763

 Score =  866 bits (437), Expect = 0.0
 Identities = 446/449 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1334 aattggtaaagataaatgtaaaagggagaaatttagcccaagttaagcaaattgcaatag 1393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    aattggtaaagataaatgtaaaagggagaaatttagcccaagttaagcaaattgcaatag 60

                                                                        
Query: 1394 ctttggaagctgagagtggtggggtactagtatctgtagataaggataccaaaggctata 1453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   ctttggaagctgagagtggtggggtactagtatctgtagataaggataccaaaggctata 120

                                                                        
Query: 1454 tagttattgtttatcgtgggaagaactatttccgtccgcgtgttcttagacccaaaagct 1513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  tagttattgtttatcgtgggaagaactatttccgtccgcgtgttcttagacccaaaagct 180

                                                                        
Query: 1514 tgttgacacgaagacaggcattggctcgatctattgtgcttcaaagacgtgaggcactga 1573
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  tgttgacacgaagacaggcattggctcgatctattgtgcttcaaagacgtgaggcactga 240

                                                                        
Query: 1574 aagaccatatgttagacttagaggagctaattgggttgctgaaatctgagctagaggata 1633
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  aagaccatatgttagacttagaggagctaattgggttgctgaaatctgagctagaggata 300

                                                                        
Query: 1634 tgaagaatgaaaaggagattgatggtgacaaaactctctactcatcaacacagagttacc 1693
            ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 301  tgaagaatgaaaaggagattgatggtgaccaaactctctactcatcaacccagagttacc 360

                                                                        
Query: 1694 ctgtttcttcagatgatgaatgggaagagaatgaagggagcgagatttattttgacaaag 1753
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 361  ctgtttcttcagatgatgaatgggaagagaatgaagggagcgagatttattttgaccaag 420

                                         
Query: 1754 ctgaaagtggcgatgaggatgagtaacat 1782
            |||||||||||||||||||||||||||||
Sbjct: 421  ctgaaagtggcgatgaggatgagtaacat 449