Miyakogusa Predicted Gene
- Lj4g3v2139160.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2139160.1 Non Chatacterized Hit- tr|C0P3W2|C0P3W2_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,43.96,0.000000000009,K
homology RNA-binding domain,K Homology domain; KH DOMAIN-CONTAINING
PROTEIN,NULL; KH DOMAIN CONTAI,CUFF.50329.1
(1212 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72222 similar to UniRef100_A7QUD9 Cluster: Chromosome... 1897 0.0
gnl|LJGI|TC57429 similar to UniRef100_A7QUD9 Cluster: Chromosome... 482 e-135
gnl|LJGI|TC70493 similar to UniRef100_A7QUD9 Cluster: Chromosome... 396 e-109
gnl|LJGI|TC76050 similar to UniRef100_A7QUD9 Cluster: Chromosome... 119 4e-26
>gnl|LJGI|TC72222 similar to UniRef100_A7QUD9 Cluster: Chromosome chr11 scaffold_177,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_177, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (55%)
Length = 958
Score = 1897 bits (957), Expect = 0.0
Identities = 957/957 (100%)
Strand = Plus / Plus
Query: 12 ggacccaatcctcaacggcaccacctcacaaccactcaccgagccaccccccgccgccga 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ggacccaatcctcaacggcaccacctcacaaccactcaccgagccaccccccgccgccga 61
Query: 72 acctgaatccgccgacaaaagatggccgggctggcccggccactgcgtgtaccggataat 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 acctgaatccgccgacaaaagatggccgggctggcccggccactgcgtgtaccggataat 121
Query: 132 cgtgccggtcctcaaggtcggcagcatcatcggccgcaaaggcgaactcatcaagaagac 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 cgtgccggtcctcaaggtcggcagcatcatcggccgcaaaggcgaactcatcaagaagac 181
Query: 192 ttgcgaagagactcgagctcgcattcgcgttctcgatgctccccttggtactcctgatcg 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ttgcgaagagactcgagctcgcattcgcgttctcgatgctccccttggtactcctgatcg 241
Query: 252 aatcgtacttgtatcagggaaagaagagccagaggcacctctttctcctgcaatggacgc 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aatcgtacttgtatcagggaaagaagagccagaggcacctctttctcctgcaatggacgc 301
Query: 312 ggtgataaggatatttaaacgcgtctcgggattggctgaaattgaagcagctcctggggc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggtgataaggatatttaaacgcgtctcgggattggctgaaattgaagcagctcctggggc 361
Query: 372 tacattttgttccgtccgtttattggtggcgtcgactcaggctatcaatttgattggaaa 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tacattttgttccgtccgtttattggtggcgtcgactcaggctatcaatttgattggaaa 421
Query: 432 gcagggctctttgattaaatccatacaggagagtaccggtgctgctgttagagtattgac 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gcagggctctttgattaaatccatacaggagagtaccggtgctgctgttagagtattgac 481
Query: 492 tggagatgagcttccatcctatgctgctgctgatgagaggattgtggaagtgcaggggga 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tggagatgagcttccatcctatgctgctgctgatgagaggattgtggaagtgcaggggga 541
Query: 552 acccttgaaggtccttaaagctctggaagcagtagttggacacttgaggaagtttttggt 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 acccttgaaggtccttaaagctctggaagcagtagttggacacttgaggaagtttttggt 601
Query: 612 tgatcatactgttcttcccctatttgagaaacctggcaatgctacaatctcccaagaccg 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgatcatactgttcttcccctatttgagaaacctggcaatgctacaatctcccaagaccg 661
Query: 672 ccagacagatgcctgggctgacaaaccatcactgcatagtgcttcacaaactagcattgt 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ccagacagatgcctgggctgacaaaccatcactgcatagtgcttcacaaactagcattgt 721
Query: 732 tgctgatattcctctttcaaataaaagggattctttctatgctgaccgtgaaagtcaatt 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tgctgatattcctctttcaaataaaagggattctttctatgctgaccgtgaaagtcaatt 781
Query: 792 ggagtcatttatctcttcctcgtcaatgtcattatatgggcaagactcatcactttctgg 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ggagtcatttatctcttcctcgtcaatgtcattatatgggcaagactcatcactttctgg 841
Query: 852 tctgcgttcttcagctcttagtcgtgccacccctcctattgttacaacggtaatacaaac 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 tctgcgttcttcagctcttagtcgtgccacccctcctattgttacaacggtaatacaaac 901
Query: 912 aatgcaaataccactgtcctatgcagaggacataattggtatgcaagggtcaaatat 968
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 aatgcaaataccactgtcctatgcagaggacataattggtatgcaagggtcaaatat 958
>gnl|LJGI|TC57429 similar to UniRef100_A7QUD9 Cluster: Chromosome chr11 scaffold_177,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_177, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (71%)
Length = 1840
Score = 482 bits (243), Expect = e-135
Identities = 828/1023 (80%), Gaps = 15/1023 (1%)
Strand = Plus / Plus
Query: 144 caaggtcggcagcatcatcggccgcaaaggcgaactcatcaagaagacttgcgaagagac 203
|||||| |||||||||||||||||||| || || ||||||||||||| |||||||||||
Sbjct: 306 caaggtgggcagcatcatcggccgcaagggagagctcatcaagaagatctgcgaagagac 365
Query: 204 tcgagctcgcattcgcgttctcgatgctccccttggtactcctgatcgaatcgtacttgt 263
|||||||||| ||||||| ||||| ||| || |||| || ||||||||||||||||| |
Sbjct: 366 tcgagctcgcgttcgcgtcctcgaggcttccgttggcacgcctgatcgaatcgtactcat 425
Query: 264 atcagggaaagaagagccagaggcacctctttctcctgcaatggacgcggtgataaggat 323
||||||||| ||||||| ||| ||| ||||||| ||||||||||| ||||| |||||| |
Sbjct: 426 atcagggaaggaagagctagatgcagctctttcacctgcaatggatgcggttataagggt 485
Query: 324 atttaaacgcgtctcggg---attggc---------tgaaattgaag---cagctcctgg 368
||| || |||||||| || || || ||| ||| ||| | ||| |||
Sbjct: 486 attcaagcgcgtctctgggctatcggaagctgatggtgagattaaagggtctgctgctgc 545
Query: 369 ggctacattttgttccgtccgtttattggtggcgtcgactcaggctatcaatttgattgg 428
|||||||| ||||| ||||||||||| |||| | || ||||||||||||||||| ||
Sbjct: 546 tgctacattctgttctatccgtttattgacggcggcaacacaggctatcaatttgatagg 605
Query: 429 aaagcagggctctttgattaaatccatacaggagagtaccggtgctgctgttagagtatt 488
|||||| || || |||| | ||||||| |||| |||||| ||| || ||| |||| |
Sbjct: 606 aaagcaaggttcaacaattagagccatacatgagaataccggcgcttctattaaagtact 665
Query: 489 gactggagatgagcttccatcctatgctgctgctgatgagaggattgtggaagtgcaggg 548
| | ||||||||| | | ||| | |||| |||| ||||||||||| | ||| |||||||
Sbjct: 666 gtcaggagatgaggtgcaatcttttgctactgcggatgagaggatcatagaattgcaggg 725
Query: 549 ggaacccttgaaggtccttaaagctctggaagcagtagttggacacttgaggaagttttt 608
||| |||||||||||||||| || |||||||| || ||||| || ||||||| |||||
Sbjct: 726 agaagccttgaaggtccttaatgcgctggaagctgtggttggccatctgaggaaattttt 785
Query: 609 ggttgatcatactgttcttcccctatttgagaaacctggcaatgctacaatctcccaaga 668
|||||| || | |||||||||| ||||||||||| || |||| | | ||| | |||||
Sbjct: 786 ggttgaccacagtgttcttcccttatttgagaaaacttacaatacgcccatcgcacaaga 845
Query: 669 ccgccagacagatgcctgggctgacaaaccatcactgcatagtgcttcacaaactagcat 728
||| || |||| ||||| || |||| |||| ||||| | | ||||||| | ||||||
Sbjct: 846 ccgtcaagcagagacctggtctaacaagtcatcgctgcacactacttcacacaatagcat 905
Query: 729 tgttgctgatattcctctttcaaataaaagggattctttctatgctgaccgtgaaagtca 788
|| ||||||| || | |||| |||||||||||| ||| || ||||||||||||||
Sbjct: 906 attttctgatatgccgccttcagcaaaaagggattctgtctttgtggaccgtgaaagtca 965
Query: 789 attggagtcatttatctcttcctcgtcaatgtcattatatgggcaagactcatcactttc 848
|||||| || || | ||||||| | ||||| | ||||| ||||| | |||| |||
Sbjct: 966 attggactctttacttccttcctccactatgtctctctatggccaagatgcttcacattc 1025
Query: 849 tggtctgcgttcttcagctcttagtcgtgccacccctcctattgttacaacggtaataca 908
| | | |||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct: 1026 taatattcgttcttcagctcttagtcgtgttggtgctcccattgttactacggtaataca 1085
Query: 909 aacaatgcaaataccactgtcctatgcagaggacataattggtatgcaagggtcaaatat 968
|||||||||||| ||||| |||||||||||||| || |||||||| |||||| ||||||
Sbjct: 1086 aacaatgcaaattccactatcctatgcagaggatatcattggtattcaagggaaaaatat 1145
Query: 969 tgattacattcgccgtactagtggagccatattgactgtgcaagagagccgggtgcctga 1028
||||||||||||||| |||||||||||||||||| |||||| |||||| ||||||||||
Sbjct: 1146 tgattacattcgccgcgctagtggagccatattgattgtgcaggagagcagggtgcctga 1205
Query: 1029 tgaaatcattgtggaaataaaaggcacctcatcacaggttcaaatagcacaacaattgat 1088
|||||||||||||||||||||||||||||| || ||||||||| | |||||| || ||||
Sbjct: 1206 tgaaatcattgtggaaataaaaggcacctcgtctcaggttcaactggcacaagaactgat 1265
Query: 1089 tcaggatgttataacccatcaccaggaacctgtcgctagtagttacagcaggttagatgc 1148
||||||| |||||| | |||| |||||||| ||||| ||||| |||||||||||||
Sbjct: 1266 tcaggatattataaacagtcacagagaacctgttgctagcagttatggcaggttagatgc 1325
Query: 1149 agg 1151
|||
Sbjct: 1326 agg 1328
>gnl|LJGI|TC70493 similar to UniRef100_A7QUD9 Cluster: Chromosome chr11 scaffold_177,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_177, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 705
Score = 396 bits (200), Expect = e-109
Identities = 213/216 (98%), Gaps = 1/216 (0%)
Strand = Plus / Plus
Query: 937 gaggacataattggtatgcaagggtcaaatattgattacattcgccgtacta-gtggagc 995
|||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct: 56 gaggacataattggtatgcaagggtcaaatattgcttaccttcgccgtactatgtggagc 115
Query: 996 catattgactgtgcaagagagccgggtgcctgatgaaatcattgtggaaataaaaggcac 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 catattgactgtgcaagagagccgggtgcctgatgaaatcattgtggaaataaaaggcac 175
Query: 1056 ctcatcacaggttcaaatagcacaacaattgattcaggatgttataacccatcaccagga 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ctcatcacaggttcaaatagcacaacaattgattcaggatgttataacccatcaccagga 235
Query: 1116 acctgtcgctagtagttacagcaggttagatgcagg 1151
||||||||||||||||||||||||||||||||||||
Sbjct: 236 acctgtcgctagtagttacagcaggttagatgcagg 271
Score = 119 bits (60), Expect = 4e-26
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1153 cgtatccgtcgtcttcattgccctcgcaaccctacaatgggtatggatcttctggtctag 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cgtatccgtcgtcttcattgccctcgcaaccctacaatgggtatggatcttctggtctag 366
Score = 85.7 bits (43), Expect = 6e-16
Identities = 57/59 (96%), Gaps = 2/59 (3%)
Strand = Plus / Minus
Query: 883 cctcctattgttacaa-cggtaatacaaac-aatgcaaataccactgtcctatgcagag 939
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 59 cctcctattgttacaatcggtaatacaaactaatgcaaataccactgtcctatgcagag 1
>gnl|LJGI|TC76050 similar to UniRef100_A7QUD9 Cluster: Chromosome chr11 scaffold_177,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_177, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 512
Score = 119 bits (60), Expect = 4e-26
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1153 cgtatccgtcgtcttcattgccctcgcaaccctacaatgggtatggatcttctggtctag 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 cgtatccgtcgtcttcattgccctcgcaaccctacaatgggtatggatcttctggtctag 101