Miyakogusa Predicted Gene
- Lj4g3v2121810.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2121810.1 tr|Q66KP7|Q66KP7_XENLA MGC85550 protein
OS=Xenopus laevis GN=rps28p9 PE=4 SV=1,77.05,2e-19,no
description,Nucleic acid-binding, OB-fold; seg,NULL;
RIBOSOMAL_S28E,Ribosomal protein S28e; 40S R,93501_g.1
(198 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69579 homologue to UniRef100_Q2HWC2 Cluster: Ribosoma... 392 e-109
gnl|LJGI|TC73907 homologue to UniRef100_Q2HWC2 Cluster: Ribosoma... 250 3e-66
>gnl|LJGI|TC69579 homologue to UniRef100_Q2HWC2 Cluster: Ribosomal protein S28e; n=1;
Medicago truncatula|Rep: Ribosomal protein S28e -
Medicago truncatula (Barrel medic), complete
Length = 593
Score = 392 bits (198), Expect = e-109
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 1 atggaatctcaggtgaagcatgctatcgtggtcaaaattatgggccgtactgggtctagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 atggaatctcaggtgaagcatgctatcgtggtcaaaattatgggccgtactgggtctagg 150
Query: 61 ggtcaagtgactcaagtcagagtcaagtttttggatgaccagaatcgtcacatcatgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ggtcaagtgactcaagtcagagtcaagtttttggatgaccagaatcgtcacatcatgagg 210
Query: 121 aacgtcaaaggaccagtcagggaaggtgacatcctcacccttctcgagtctgagagagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aacgtcaaaggaccagtcagggaaggtgacatcctcacccttctcgagtctgagagagaa 270
Query: 181 gcaagaaggttgcgctag 198
||||||||||||||||||
Sbjct: 271 gcaagaaggttgcgctag 288
>gnl|LJGI|TC73907 homologue to UniRef100_Q2HWC2 Cluster: Ribosomal protein S28e; n=1;
Medicago truncatula|Rep: Ribosomal protein S28e -
Medicago truncatula (Barrel medic), complete
Length = 746
Score = 250 bits (126), Expect = 3e-66
Identities = 180/198 (90%)
Strand = Plus / Plus
Query: 1 atggaatctcaggtgaagcatgctatcgtggtcaaaattatgggccgtactgggtctagg 60
||||| |||||||||||||||||||| || |||||||||||||| |||||||| || ||
Sbjct: 85 atggagtctcaggtgaagcatgctattgttgtcaaaattatgggtcgtactggatccaga 144
Query: 61 ggtcaagtgactcaagtcagagtcaagtttttggatgaccagaatcgtcacatcatgagg 120
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 145 ggtcaggtcactcaagtcagagttaagtttttggatgaccagaatcgtcacatcatgagg 204
Query: 121 aacgtcaaaggaccagtcagggaaggtgacatcctcacccttctcgagtctgagagagaa 180
||||| ||||| ||||| |||||||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 205 aacgtgaaaggtccagtgagggaaggggacattctcacccttcttgagtctgaaagagaa 264
Query: 181 gcaagaaggttgcgctag 198
|| |||||||||||||||
Sbjct: 265 gccagaaggttgcgctag 282