Miyakogusa Predicted Gene

Lj4g3v2120370.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v2120370.1 tr|I3S2B8|I3S2B8_LOTJA Ribulose bisphosphate
carboxylase small chain OS=Lotus japonicus PE=2 SV=1,99.42,0,Ribulose
bisphosphate carboxylase, smal,Ribulose bisphosphate carboxylase small
chain, domain; RuBis,CUFF.50254.1
         (525 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC64166 similar to UniRef100_A7Q6D7 Cluster: Ribulose b...  1041   0.0  
gnl|LJGI|TC63086 homologue to UniRef100_A7Q6D7 Cluster: Ribulose...   266   1e-70

>gnl|LJGI|TC64166 similar to UniRef100_A7Q6D7 Cluster: Ribulose bisphosphate
           carboxylase small chain; n=1; Vitis vinifera|Rep:
           Ribulose bisphosphate carboxylase small chain - Vitis
           vinifera (Grape), partial (77%)
          Length = 661

 Score = 1041 bits (525), Expect = 0.0
 Identities = 525/525 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtctgctggaactttcacagctctggttgctggggctggctttgttggcttgaaatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29  atgtctgctggaactttcacagctctggttgctggggctggctttgttggcttgaaatcc 88

                                                                       
Query: 61  aactcgtcaaatctttaccctgttacagggttcaatgaatggaaaagcaagactacatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  aactcgtcaaatctttaccctgttacagggttcaatgaatggaaaagcaagactacatcc 148

                                                                       
Query: 121 aatggttctaaaactctctgcatgaagacatggaatcccatcaataataggaagtttgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aatggttctaaaactctctgcatgaagacatggaatcccatcaataataggaagtttgaa 208

                                                                       
Query: 181 acactatcctacctcccaccccttacagatgagtccattgcaaaggaggttgactacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 acactatcctacctcccaccccttacagatgagtccattgcaaaggaggttgactacatg 268

                                                                       
Query: 241 ctcaaaaagggatggatcccttgccttgaatttgatgagttggggcatattcgtagagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctcaaaaagggatggatcccttgccttgaatttgatgagttggggcatattcgtagagaa 328

                                                                       
Query: 301 aatagcaggatgccagggtactatgatggtaggtattggacattgtggaagctacccatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aatagcaggatgccagggtactatgatggtaggtattggacattgtggaagctacccatg 388

                                                                       
Query: 361 tttggttgcaatgactcatctcaagttctgaacgagatccaggaatgcaaaagggcttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tttggttgcaatgactcatctcaagttctgaacgagatccaggaatgcaaaagggcttat 448

                                                                       
Query: 421 ccaaatgcatatatacgctgcattgcatttgacaaccaccgccacatgcaatccatggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ccaaatgcatatatacgctgcattgcatttgacaaccaccgccacatgcaatccatggct 508

                                                        
Query: 481 ttcatcattcagaaaccagcagccaataccactaccacttgactc 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttcatcattcagaaaccagcagccaataccactaccacttgactc 553


>gnl|LJGI|TC63086 homologue to UniRef100_A7Q6D7 Cluster: Ribulose bisphosphate
           carboxylase small chain; n=1; Vitis vinifera|Rep:
           Ribulose bisphosphate carboxylase small chain - Vitis
           vinifera (Grape), partial (47%)
          Length = 742

 Score =  266 bits (134), Expect = 1e-70
 Identities = 134/134 (100%)
 Strand = Plus / Minus

                                                                       
Query: 146 agacatggaatcccatcaataataggaagtttgaaacactatcctacctcccacccctta 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agacatggaatcccatcaataataggaagtttgaaacactatcctacctcccacccctta 565

                                                                       
Query: 206 cagatgagtccattgcaaaggaggttgactacatgctcaaaaagggatggatcccttgcc 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagatgagtccattgcaaaggaggttgactacatgctcaaaaagggatggatcccttgcc 505

                         
Query: 266 ttgaatttgatgag 279
           ||||||||||||||
Sbjct: 504 ttgaatttgatgag 491



 Score =  236 bits (119), Expect = 1e-61
 Identities = 122/123 (99%)
 Strand = Plus / Minus

                                                                       
Query: 278 agttggggcatattcgtagagaaaatagcaggatgccagggtactatgatggtaggtatt 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 agttggggcatattcgtagagaaaatagcaggatgccagggtactatgatggtaggtatt 65

                                                                       
Query: 338 ggacattgtggaagctacccatgtttggttgcaatgactcatctcaagttctgaacgaga 397
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 64  ggacattgtggaagctacccatgtttggttgcaatgactcgtctcaagttctgaacgaga 5

              
Query: 398 tcc 400
           |||
Sbjct: 4   tcc 2