Miyakogusa Predicted Gene
- Lj4g3v2106180.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2106180.1 tr|F2E7L1|F2E7L1_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,100,0,Histone-fold,Histone-fold; HISTONE H4,Histone H4;
HISTONE_H4,Histone H4, conserved site; HISTONEH4,H,CUFF.50258.1
(312 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72402 homologue to UniRef100_UPI00001D6F72 Cluster: h... 583 e-166
gnl|LJGI|FS336919 homologue to UniRef100_UPI0000EB00E4 Cluster: ... 571 e-163
gnl|LJGI|TC68590 homologue to UniRef100_UPI0000EB00E4 Cluster: H... 531 e-151
gnl|LJGI|TC65660 homologue to UniRef100_Q4SKJ3 Cluster: Histone ... 174 2e-43
gnl|LJGI|TC65715 UniRef100_A4RS62 Cluster: Histone H4; n=1; Ostr... 161 3e-39
gnl|LJGI|TC68238 homologue to UniRef100_UPI000066070E Cluster: H... 159 1e-38
gnl|LJGI|TC70944 homologue to UniRef100_UPI000050340F Cluster: H... 131 3e-30
gnl|LJGI|BE122552 homologue to UniRef100_UPI00001D6F72 Cluster: ... 123 7e-28
gnl|LJGI|TC80187 homologue to UniRef100_UPI000050340F Cluster: H... 115 2e-25
gnl|LJGI|TC76382 homologue to UniRef100_UPI000050340F Cluster: H... 94 6e-19
gnl|LJGI|GO024544 similar to UniRef100_UPI000065EF81 Cluster: Ho... 80 9e-15
>gnl|LJGI|TC72402 homologue to UniRef100_UPI00001D6F72 Cluster: histone cluster 4,
H4; n=2; Mus musculus|Rep: histone cluster 4, H4 - Mus
musculus, complete
Length = 612
Score = 583 bits (294), Expect = e-166
Identities = 300/302 (99%)
Strand = Plus / Plus
Query: 1 atgtcaggaagaggaaagggaggcaagggtttgggcaagggaggagctaagcgtcacagg 60
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 58 atgtcaggaagaggaaagggaggcaagggtttgggaaagggaggagcgaagcgtcacagg 117
Query: 61 aaggttctgagggataacatccagggaatcaccaagcctgccattcgccgtctcgcaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 aaggttctgagggataacatccagggaatcaccaagcctgccattcgccgtctcgcaagg 177
Query: 121 cgtggtggtgtgaagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 cgtggtggtgtgaagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaag 237
Query: 181 atcttcctcgagaacgttattcgtgatgctgttacctacactgagcacgctcgccgcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 atcttcctcgagaacgttattcgtgatgctgttacctacactgagcacgctcgccgcaag 297
Query: 241 actgtgacggcgatggacgttgtttacgctctcaagaggcagggcaggaccctctatggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 actgtgacggcgatggacgttgtttacgctctcaagaggcagggcaggaccctctatggt 357
Query: 301 tt 302
||
Sbjct: 358 tt 359
>gnl|LJGI|FS336919 homologue to UniRef100_UPI0000EB00E4 Cluster: Histone H4; n=1;
Canis lupus familiaris|Rep: Histone H4 - Canis
familiaris, partial (96%)
Length = 529
Score = 571 bits (288), Expect = e-163
Identities = 306/312 (98%)
Strand = Plus / Plus
Query: 1 atgtcaggaagaggaaagggaggcaagggtttgggcaagggaggagctaagcgtcacagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 atgtcaggaagaggaaagggaggcaagggtttgggcaagggaggagctaagcgtcacagg 126
Query: 61 aaggttctgagggataacatccagggaatcaccaagcctgccattcgccgtctcgcaagg 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 127 aaggttctgagggataacatccagggaatcaccaagcctgcgattcgccgtctcgcaagg 186
Query: 121 cgtggtggtgtgaagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaag 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cgtggcggtgtgaagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaag 246
Query: 181 atcttcctcgagaacgttattcgtgatgctgttacctacactgagcacgctcgccgcaag 240
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 247 atcttcctcgagaacgttattcgcgatgctgtgacctacactgagcacgctcgccgtaag 306
Query: 241 actgtgacggcgatggacgttgtttacgctctcaagaggcagggcaggaccctctatggt 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 actgtgacggcgatggatgttgtttacgctctcaagaggcagggcaggaccctctatggt 366
Query: 301 ttcggtggttag 312
||||||||||||
Sbjct: 367 ttcggtggttag 378
>gnl|LJGI|TC68590 homologue to UniRef100_UPI0000EB00E4 Cluster: Histone H4; n=1;
Canis lupus familiaris|Rep: Histone H4 - Canis
familiaris, partial (97%)
Length = 590
Score = 531 bits (268), Expect = e-151
Identities = 301/312 (96%)
Strand = Plus / Plus
Query: 1 atgtcaggaagaggaaagggaggcaagggtttgggcaagggaggagctaagcgtcacagg 60
||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||| ||
Sbjct: 73 atgtcaggaagaggaaaaggaggcaagggtttgggtaaaggaggagcgaagcgtcaccgg 132
Query: 61 aaggttctgagggataacatccagggaatcaccaagcctgccattcgccgtctcgcaagg 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 133 aaggttctgagggataacatccagggaatcaccaagcctgcgattcgccgtctcgcaagg 192
Query: 121 cgtggtggtgtgaagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaag 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cgtggcggtgtgaagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaag 252
Query: 181 atcttcctcgagaacgttattcgtgatgctgttacctacactgagcacgctcgccgcaag 240
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 253 atcttcctcgagaacgttattcgcgatgctgtgacctacactgagcacgctcgccgtaag 312
Query: 241 actgtgacggcgatggacgttgtttacgctctcaagaggcagggcaggaccctctatggt 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 actgtgacggcgatggatgttgtttacgctctcaagaggcagggcaggaccctctatggt 372
Query: 301 ttcggtggttag 312
||||||||||||
Sbjct: 373 ttcggtggttag 384
>gnl|LJGI|TC65660 homologue to UniRef100_Q4SKJ3 Cluster: Histone H4; n=1; Tetraodon
nigroviridis|Rep: Histone H4 - Tetraodon nigroviridis
(Green puffer), partial (45%)
Length = 681
Score = 174 bits (88), Expect = 2e-43
Identities = 247/300 (82%)
Strand = Plus / Plus
Query: 13 ggaaagggaggcaagggtttgggcaagggaggagctaagcgtcacaggaaggttctgagg 72
||||| ||||||||||| ||||| ||||||||||| || || ||| | |||||||| |
Sbjct: 105 ggaaaaggaggcaagggattgggaaagggaggagcgaaacgacaccgtaaggttctccgc 164
Query: 73 gataacatccagggaatcaccaagcctgccattcgccgtctcgcaaggcgtggtggtgtg 132
|| ||||| ||||||||||| ||||| || ||||| ||| | || | | ||||| |||
Sbjct: 165 gacaacattcagggaatcacgaagccagcgattcggcgtttggctcgcaggggtggcgtg 224
Query: 133 aagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaagatcttcctcgag 192
||||||||||| || | |||||||| || ||||| |||||||| |||||||| || |||
Sbjct: 225 aagcgtatcagtggcttgatctatgaggagactcgtggtgttctgaagatctttcttgag 284
Query: 193 aacgttattcgtgatgctgttacctacactgagcacgctcgccgcaagactgtgacggcg 252
|| || ||||||||||||||||||||||||||||| ||| | | |||||||| || ||
Sbjct: 285 aatgtgattcgtgatgctgttacctacactgagcatgctaggaggaagactgttactgct 344
Query: 253 atggacgttgtttacgctctcaagaggcagggcaggaccctctatggtttcggtggttag 312
||||| ||||| || ||||||||||||||||| || ||||||||||| || || ||||||
Sbjct: 345 atggatgttgtgtatgctctcaagaggcagggaagaaccctctatggatttgggggttag 404
>gnl|LJGI|TC65715 UniRef100_A4RS62 Cluster: Histone H4; n=1; Ostreococcus lucimarinus
CCE9901|Rep: Histone H4 - Ostreococcus lucimarinus
(strain CCE9901), complete
Length = 626
Score = 161 bits (81), Expect = 3e-39
Identities = 231/281 (82%)
Strand = Plus / Plus
Query: 13 ggaaagggaggcaagggtttgggcaagggaggagctaagcgtcacaggaaggttctgagg 72
||||| ||||||||||| ||||| ||||||||||| || || ||| | |||||||| |
Sbjct: 108 ggaaaaggaggcaagggattgggaaagggaggagcgaaacgacaccgtaaggttctccgc 167
Query: 73 gataacatccagggaatcaccaagcctgccattcgccgtctcgcaaggcgtggtggtgtg 132
|| ||||| ||||||||||| ||||| || ||||| || | || | | ||||| |||
Sbjct: 168 gacaacattcagggaatcacgaagccagcgattcggcgattggctcgcaggggtggcgtg 227
Query: 133 aagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaagatcttcctcgag 192
||||||||||| || | |||||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 228 aagcgtatcagtggcttgatctatgaggagactcgtggtgttctcaagatctttctcgag 287
Query: 193 aacgttattcgtgatgctgttacctacactgagcacgctcgccgcaagactgtgacggcg 252
|| || ||||||||||||||||||||||||||||| ||| | | |||||||| || ||
Sbjct: 288 aatgtgattcgtgatgctgttacctacactgagcatgctaggaggaagactgttactgcc 347
Query: 253 atggacgttgtttacgctctcaagaggcagggcaggaccct 293
||||| || || || ||||||||||| ||||| ||||||||
Sbjct: 348 atggatgtggtgtatgctctcaagagacagggaaggaccct 388
>gnl|LJGI|TC68238 homologue to UniRef100_UPI000066070E Cluster: Homolog of Homo
sapiens "H2A histone family, member X (H2AFX), mRNA;
n=1; Takifugu rubripes|Rep: Homolog of Homo sapiens "H2A
histone family, member X (H2AFX), mRNA - Takifugu
rubripes, partial (33%)
Length = 603
Score = 159 bits (80), Expect = 1e-38
Identities = 245/300 (81%)
Strand = Plus / Plus
Query: 13 ggaaagggaggcaagggtttgggcaagggaggagctaagcgtcacaggaaggttctgagg 72
||||| ||||| || || ||||||||||||||||| || || ||| | ||||| || |
Sbjct: 79 ggaaaaggaggtaaaggattgggcaagggaggagccaaacggcaccgtaaggtcctccgc 138
Query: 73 gataacatccagggaatcaccaagcctgccattcgccgtctcgcaaggcgtggtggtgtg 132
|| ||||||||||||||||| ||||| || ||||| ||| | || | | ||||| |||
Sbjct: 139 gacaacatccagggaatcacgaagccagcgattcggcgtttggctcgcaggggtggcgtg 198
Query: 133 aagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaagatcttcctcgag 192
||||||||||| || | |||||||| || ||||| ||||||||||||||||| || |||
Sbjct: 199 aagcgtatcagtggcttgatctatgaggagactcgtggtgttctcaagatctttcttgag 258
Query: 193 aacgttattcgtgatgctgttacctacactgagcacgctcgccgcaagactgtgacggcg 252
|| || ||||||||||||||||||||||||||||| ||| | | |||||||| || ||
Sbjct: 259 aatgtgattcgtgatgctgttacctacactgagcatgctaggaggaagactgttactgcc 318
Query: 253 atggacgttgtttacgctctcaagaggcagggcaggaccctctatggtttcggtggttag 312
||||| || || || ||||||||||| ||||| ||||| |||||||| || || ||||||
Sbjct: 319 atggatgtggtgtatgctctcaagagacagggaaggacactctatggatttgggggttag 378
>gnl|LJGI|TC70944 homologue to UniRef100_UPI000050340F Cluster: Histone H4 [Contains:
Osteogenic growth peptide (OGP)].; n=1; Rattus
norvegicus|Rep: Histone H4 [Contains: Osteogenic growth
peptide (OGP)]. - Rattus norvegicus, complete
Length = 495
Score = 131 bits (66), Expect = 3e-30
Identities = 240/298 (80%)
Strand = Plus / Plus
Query: 13 ggaaagggaggcaagggtttgggcaagggaggagctaagcgtcacaggaaggttctgagg 72
|||||||| |||||||| | |||||||||||||| ||| | ||||||||||| ||| |
Sbjct: 71 ggaaagggtggcaagggactcggcaagggaggagccaagaggcacaggaaggtgctgcgc 130
Query: 73 gataacatccagggaatcaccaagcctgccattcgccgtctcgcaaggcgtggtggtgtg 132
|| ||||||||||| ||||| ||||| || ||||| | | || ||| | ||||| |||
Sbjct: 131 gacaacatccagggcatcacgaagccggcgattcggaggttggcgaggagaggtggcgtg 190
Query: 133 aagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaagatcttcctcgag 192
||| | ||||| || | |||||||| || ||| | ||||| | ||||||||| | |||
Sbjct: 191 aagaggatcagtgggttgatctatgaggagactaggggtgtgttgaagatcttcttggag 250
Query: 193 aacgttattcgtgatgctgttacctacactgagcacgctcgccgcaagactgtgacggcg 252
|| || ||||||||||| || || ||||| ||||| ||| | | ||||||||||| ||
Sbjct: 251 aatgtgattcgtgatgcggtgacgtacacggagcatgctaggaggaagactgtgactgct 310
Query: 253 atggacgttgtttacgctctcaagaggcagggcaggaccctctatggtttcggtggtt 310
||||| |||||||| ||||||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 311 atggatgttgtttatgctctcaagaggcagggaaggactctctatggattcggaggtt 368
>gnl|LJGI|BE122552 homologue to UniRef100_UPI00001D6F72 Cluster: histone cluster 4,
H4; n=2; Mus musculus|Rep: histone cluster 4, H4 - Mus
musculus, partial (79%)
Length = 372
Score = 123 bits (62), Expect = 7e-28
Identities = 179/218 (82%)
Strand = Plus / Plus
Query: 13 ggaaagggaggcaagggtttgggcaagggaggagctaagcgtcacaggaaggttctgagg 72
||||| ||||||||||| || || ||||||||||| || || ||| | ||||| ||| |
Sbjct: 137 ggaaaaggaggcaagggattaggaaagggaggagcaaaacgacaccgtaaggtgctgcgc 196
Query: 73 gataacatccagggaatcaccaagcctgccattcgccgtctcgcaaggcgtggtggtgtg 132
|| ||||||||||| || |||||||| || ||||| ||| | || | | || || |||
Sbjct: 197 gacaacatccagggcataaccaagccggcgattcggcgtttggcgcgtaggggcggcgtg 256
Query: 133 aagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaagatcttcctcgag 192
|||||||||||||| || |||||||| || || ||||| || ||||||||||| ||||||
Sbjct: 257 aagcgtatcagcggccttatctatgaggagacacgcggcgtgctcaagatctttctcgag 316
Query: 193 aacgttattcgtgatgctgttacctacactgagcacgc 230
|| || || || ||||||||||||||||||||||||||
Sbjct: 317 aatgtgatccgggatgctgttacctacactgagcacgc 354
>gnl|LJGI|TC80187 homologue to UniRef100_UPI000050340F Cluster: Histone H4 [Contains:
Osteogenic growth peptide (OGP)].; n=1; Rattus
norvegicus|Rep: Histone H4 [Contains: Osteogenic growth
peptide (OGP)]. - Rattus norvegicus, complete
Length = 492
Score = 115 bits (58), Expect = 2e-25
Identities = 238/298 (79%)
Strand = Plus / Plus
Query: 13 ggaaagggaggcaagggtttgggcaagggaggagctaagcgtcacaggaaggttctgagg 72
||||||||||||||||| ||||| ||||||||||| ||| | || | ||||| ||| |
Sbjct: 28 ggaaagggaggcaagggattgggaaagggaggagcaaagaggcatcgcaaggtgctgcgc 87
Query: 73 gataacatccagggaatcaccaagcctgccattcgccgtctcgcaaggcgtggtggtgtg 132
|| ||||||||||||||||| ||||| || ||||| | | || || | || || |||
Sbjct: 88 gacaacatccagggaatcacgaagccggcgattcggagattggcgagaagaggcggagtg 147
Query: 133 aagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaagatcttcctcgag 192
||| | ||||| || | |||||||| ||||| | || || |||||||| || ||||||
Sbjct: 148 aagaggatcagtggcttgatctatgaggaaaccagaggggtgctcaagatttttctcgag 207
Query: 193 aacgttattcgtgatgctgttacctacactgagcacgctcgccgcaagactgtgacggcg 252
|| || ||||||||||| ||||| ||||| ||||| || | | |||||||| || ||
Sbjct: 208 aatgtgattcgtgatgcggttacatacaccgagcatgcgaggaggaagactgttactgct 267
Query: 253 atggacgttgtttacgctctcaagaggcagggcaggaccctctatggtttcggtggtt 310
||||| |||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||
Sbjct: 268 atggatgttgtttatgctcttaagaggcagggaaggaccctctatggattcgggggtt 325
>gnl|LJGI|TC76382 homologue to UniRef100_UPI000050340F Cluster: Histone H4 [Contains:
Osteogenic growth peptide (OGP)].; n=1; Rattus
norvegicus|Rep: Histone H4 [Contains: Osteogenic growth
peptide (OGP)]. - Rattus norvegicus, complete
Length = 534
Score = 93.7 bits (47), Expect = 6e-19
Identities = 227/287 (79%)
Strand = Plus / Plus
Query: 13 ggaaagggaggcaagggtttgggcaagggaggagctaagcgtcacaggaaggttctgagg 72
|||||||| || ||||| | |||||||| || || ||| | ||||||||||| || |
Sbjct: 62 ggaaagggcggaaagggactcggcaagggcggcgccaagaggcacaggaaggtgctccgc 121
Query: 73 gataacatccagggaatcaccaagcctgccattcgccgtctcgcaaggcgtggtggtgtg 132
|| ||||||||||| ||||| ||||| || ||||| | || || ||| | || |||||
Sbjct: 122 gacaacatccagggcatcacgaagccggcgattcggaggctggcgaggagaggcggtgtc 181
Query: 133 aagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaagatcttcctcgag 192
||| | ||||||||| | |||||||| || ||| | || || || ||||| ||| | |||
Sbjct: 182 aagaggatcagcggtttgatctatgaggagactaggggagtgctgaagattttcttggag 241
Query: 193 aacgttattcgtgatgctgttacctacactgagcacgctcgccgcaagactgtgacggcg 252
||||| ||||||||||| || || ||||| ||||| ||| | | ||||| ||||| ||
Sbjct: 242 aacgtgattcgtgatgcggtgacttacacggagcatgctaggaggaagacggtgactgct 301
Query: 253 atggacgttgtttacgctctcaagaggcagggcaggaccctctatgg 299
||||| || ||||| ||||||||||||||||| || |||||||||||
Sbjct: 302 atggatgtggtttatgctctcaagaggcagggaagaaccctctatgg 348
>gnl|LJGI|GO024544 similar to UniRef100_UPI000065EF81 Cluster: Homolog of Homo sapiens
"H2A histone family, member X (H2AFX), mRNA; n=1;
Takifugu rubripes|Rep: Homolog of Homo sapiens "H2A
histone family, member X (H2AFX), mRNA - Takifugu
rubripes, partial (23%)
Length = 650
Score = 79.8 bits (40), Expect = 9e-15
Identities = 139/172 (80%)
Strand = Plus / Plus
Query: 139 atcagcggtctcatctatgaagaaactcgcggtgttctcaagatcttcctcgagaacgtt 198
|||||||||||||||||||| || |||||| |||| | ||||||| |||||||||||
Sbjct: 449 atcagcggtctcatctatgaggagactcgcagtgtgttgtagatctttctcgagaacgtg 508
Query: 199 attcgtgatgctgttacctacactgagcacgctcgccgcaagactgtgacggcgatggac 258
|| | |||||| | ||||||||||||||| | | |||| |||| || |||||
Sbjct: 509 atctgcgatgctatgacctacactgagcacaccaagtggaagatgatgaccgccatggat 568
Query: 259 gttgtttacgctctcaagaggcagggcaggaccctctatggtttcggtggtt 310
| ||||| ||||||||||||||||||||||||||||| || || |||||||
Sbjct: 569 atcgtttatgctctcaagaggcagggcaggaccctctacggatttggtggtt 620