Miyakogusa Predicted Gene
- Lj4g3v2096070.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2096070.1 tr|F2E7L1|F2E7L1_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,100,0,HISTONEH4,Histone
H4; no description,Histone-fold; Histone,Histone core; HISTONE
H4,Histone H4; seg,,CUFF.50257.1
(312 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68590 homologue to UniRef100_UPI0000EB00E4 Cluster: H... 595 e-170
gnl|LJGI|FS336919 homologue to UniRef100_UPI0000EB00E4 Cluster: ... 555 e-158
gnl|LJGI|TC72402 homologue to UniRef100_UPI00001D6F72 Cluster: h... 527 e-149
gnl|LJGI|TC65660 homologue to UniRef100_Q4SKJ3 Cluster: Histone ... 206 6e-53
gnl|LJGI|TC65715 UniRef100_A4RS62 Cluster: Histone H4; n=1; Ostr... 192 9e-49
gnl|LJGI|TC68238 homologue to UniRef100_UPI000066070E Cluster: H... 174 2e-43
gnl|LJGI|BE122552 homologue to UniRef100_UPI00001D6F72 Cluster: ... 155 2e-37
gnl|LJGI|TC80187 homologue to UniRef100_UPI000050340F Cluster: H... 139 1e-32
gnl|LJGI|TC76382 homologue to UniRef100_UPI000050340F Cluster: H... 119 1e-26
gnl|LJGI|TC70944 homologue to UniRef100_UPI000050340F Cluster: H... 117 4e-26
gnl|LJGI|GO024544 similar to UniRef100_UPI000065EF81 Cluster: Ho... 96 2e-19
>gnl|LJGI|TC68590 homologue to UniRef100_UPI0000EB00E4 Cluster: Histone H4; n=1;
Canis lupus familiaris|Rep: Histone H4 - Canis
familiaris, partial (97%)
Length = 590
Score = 595 bits (300), Expect = e-170
Identities = 309/312 (99%)
Strand = Plus / Plus
Query: 1 atgtcaggaagaggaaaaggaggcaagggtttgggtaaaggaggagcgaagcgtcaccgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 atgtcaggaagaggaaaaggaggcaagggtttgggtaaaggaggagcgaagcgtcaccgg 132
Query: 61 aaggttctgagggataacatccagggaatcaccaagcctgcgattcgccgtctcgcaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 aaggttctgagggataacatccagggaatcaccaagcctgcgattcgccgtctcgcaagg 192
Query: 121 cgtggcggtgtgaagcgtatcagcggtctcatctatgaggaaactcgcggtgttctcaag 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 193 cgtggcggtgtgaagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaag 252
Query: 181 atcttcctcgagaacgttattcgtgatgctgttacctacactgagcacgctcgccgtaag 240
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 253 atcttcctcgagaacgttattcgcgatgctgtgacctacactgagcacgctcgccgtaag 312
Query: 241 actgtgacggcgatggatgttgtttacgctctcaagaggcagggcaggaccctctatggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 actgtgacggcgatggatgttgtttacgctctcaagaggcagggcaggaccctctatggt 372
Query: 301 ttcggtggttag 312
||||||||||||
Sbjct: 373 ttcggtggttag 384
>gnl|LJGI|FS336919 homologue to UniRef100_UPI0000EB00E4 Cluster: Histone H4; n=1;
Canis lupus familiaris|Rep: Histone H4 - Canis
familiaris, partial (96%)
Length = 529
Score = 555 bits (280), Expect = e-158
Identities = 304/312 (97%)
Strand = Plus / Plus
Query: 1 atgtcaggaagaggaaaaggaggcaagggtttgggtaaaggaggagcgaagcgtcaccgg 60
||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||| ||
Sbjct: 67 atgtcaggaagaggaaagggaggcaagggtttgggcaagggaggagctaagcgtcacagg 126
Query: 61 aaggttctgagggataacatccagggaatcaccaagcctgcgattcgccgtctcgcaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 aaggttctgagggataacatccagggaatcaccaagcctgcgattcgccgtctcgcaagg 186
Query: 121 cgtggcggtgtgaagcgtatcagcggtctcatctatgaggaaactcgcggtgttctcaag 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 187 cgtggcggtgtgaagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaag 246
Query: 181 atcttcctcgagaacgttattcgtgatgctgttacctacactgagcacgctcgccgtaag 240
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 247 atcttcctcgagaacgttattcgcgatgctgtgacctacactgagcacgctcgccgtaag 306
Query: 241 actgtgacggcgatggatgttgtttacgctctcaagaggcagggcaggaccctctatggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 actgtgacggcgatggatgttgtttacgctctcaagaggcagggcaggaccctctatggt 366
Query: 301 ttcggtggttag 312
||||||||||||
Sbjct: 367 ttcggtggttag 378
>gnl|LJGI|TC72402 homologue to UniRef100_UPI00001D6F72 Cluster: histone cluster 4,
H4; n=2; Mus musculus|Rep: histone cluster 4, H4 - Mus
musculus, complete
Length = 612
Score = 527 bits (266), Expect = e-149
Identities = 293/302 (97%)
Strand = Plus / Plus
Query: 1 atgtcaggaagaggaaaaggaggcaagggtttgggtaaaggaggagcgaagcgtcaccgg 60
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| ||
Sbjct: 58 atgtcaggaagaggaaagggaggcaagggtttgggaaagggaggagcgaagcgtcacagg 117
Query: 61 aaggttctgagggataacatccagggaatcaccaagcctgcgattcgccgtctcgcaagg 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 118 aaggttctgagggataacatccagggaatcaccaagcctgccattcgccgtctcgcaagg 177
Query: 121 cgtggcggtgtgaagcgtatcagcggtctcatctatgaggaaactcgcggtgttctcaag 180
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 178 cgtggtggtgtgaagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaag 237
Query: 181 atcttcctcgagaacgttattcgtgatgctgttacctacactgagcacgctcgccgtaag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 238 atcttcctcgagaacgttattcgtgatgctgttacctacactgagcacgctcgccgcaag 297
Query: 241 actgtgacggcgatggatgttgtttacgctctcaagaggcagggcaggaccctctatggt 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 actgtgacggcgatggacgttgtttacgctctcaagaggcagggcaggaccctctatggt 357
Query: 301 tt 302
||
Sbjct: 358 tt 359
>gnl|LJGI|TC65660 homologue to UniRef100_Q4SKJ3 Cluster: Histone H4; n=1; Tetraodon
nigroviridis|Rep: Histone H4 - Tetraodon nigroviridis
(Green puffer), partial (45%)
Length = 681
Score = 206 bits (104), Expect = 6e-53
Identities = 251/300 (83%)
Strand = Plus / Plus
Query: 13 ggaaaaggaggcaagggtttgggtaaaggaggagcgaagcgtcaccggaaggttctgagg 72
||||||||||||||||| ||||| || ||||||||||| || ||||| |||||||| |
Sbjct: 105 ggaaaaggaggcaagggattgggaaagggaggagcgaaacgacaccgtaaggttctccgc 164
Query: 73 gataacatccagggaatcaccaagcctgcgattcgccgtctcgcaaggcgtggcggtgtg 132
|| ||||| ||||||||||| ||||| |||||||| ||| | || | | || || |||
Sbjct: 165 gacaacattcagggaatcacgaagccagcgattcggcgtttggctcgcaggggtggcgtg 224
Query: 133 aagcgtatcagcggtctcatctatgaggaaactcgcggtgttctcaagatcttcctcgag 192
||||||||||| || | ||||||||||| ||||| |||||||| |||||||| || |||
Sbjct: 225 aagcgtatcagtggcttgatctatgaggagactcgtggtgttctgaagatctttcttgag 284
Query: 193 aacgttattcgtgatgctgttacctacactgagcacgctcgccgtaagactgtgacggcg 252
|| || ||||||||||||||||||||||||||||| ||| | | |||||||| || ||
Sbjct: 285 aatgtgattcgtgatgctgttacctacactgagcatgctaggaggaagactgttactgct 344
Query: 253 atggatgttgtttacgctctcaagaggcagggcaggaccctctatggtttcggtggttag 312
||||||||||| || ||||||||||||||||| || ||||||||||| || || ||||||
Sbjct: 345 atggatgttgtgtatgctctcaagaggcagggaagaaccctctatggatttgggggttag 404
>gnl|LJGI|TC65715 UniRef100_A4RS62 Cluster: Histone H4; n=1; Ostreococcus lucimarinus
CCE9901|Rep: Histone H4 - Ostreococcus lucimarinus
(strain CCE9901), complete
Length = 626
Score = 192 bits (97), Expect = 9e-49
Identities = 235/281 (83%)
Strand = Plus / Plus
Query: 13 ggaaaaggaggcaagggtttgggtaaaggaggagcgaagcgtcaccggaaggttctgagg 72
||||||||||||||||| ||||| || ||||||||||| || ||||| |||||||| |
Sbjct: 108 ggaaaaggaggcaagggattgggaaagggaggagcgaaacgacaccgtaaggttctccgc 167
Query: 73 gataacatccagggaatcaccaagcctgcgattcgccgtctcgcaaggcgtggcggtgtg 132
|| ||||| ||||||||||| ||||| |||||||| || | || | | || || |||
Sbjct: 168 gacaacattcagggaatcacgaagccagcgattcggcgattggctcgcaggggtggcgtg 227
Query: 133 aagcgtatcagcggtctcatctatgaggaaactcgcggtgttctcaagatcttcctcgag 192
||||||||||| || | ||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct: 228 aagcgtatcagtggcttgatctatgaggagactcgtggtgttctcaagatctttctcgag 287
Query: 193 aacgttattcgtgatgctgttacctacactgagcacgctcgccgtaagactgtgacggcg 252
|| || ||||||||||||||||||||||||||||| ||| | | |||||||| || ||
Sbjct: 288 aatgtgattcgtgatgctgttacctacactgagcatgctaggaggaagactgttactgcc 347
Query: 253 atggatgttgtttacgctctcaagaggcagggcaggaccct 293
|||||||| || || ||||||||||| ||||| ||||||||
Sbjct: 348 atggatgtggtgtatgctctcaagagacagggaaggaccct 388
>gnl|LJGI|TC68238 homologue to UniRef100_UPI000066070E Cluster: Homolog of Homo
sapiens "H2A histone family, member X (H2AFX), mRNA;
n=1; Takifugu rubripes|Rep: Homolog of Homo sapiens "H2A
histone family, member X (H2AFX), mRNA - Takifugu
rubripes, partial (33%)
Length = 603
Score = 174 bits (88), Expect = 2e-43
Identities = 247/300 (82%)
Strand = Plus / Plus
Query: 13 ggaaaaggaggcaagggtttgggtaaaggaggagcgaagcgtcaccggaaggttctgagg 72
||||||||||| || || ||||| || |||||||| || || ||||| ||||| || |
Sbjct: 79 ggaaaaggaggtaaaggattgggcaagggaggagccaaacggcaccgtaaggtcctccgc 138
Query: 73 gataacatccagggaatcaccaagcctgcgattcgccgtctcgcaaggcgtggcggtgtg 132
|| ||||||||||||||||| ||||| |||||||| ||| | || | | || || |||
Sbjct: 139 gacaacatccagggaatcacgaagccagcgattcggcgtttggctcgcaggggtggcgtg 198
Query: 133 aagcgtatcagcggtctcatctatgaggaaactcgcggtgttctcaagatcttcctcgag 192
||||||||||| || | ||||||||||| ||||| ||||||||||||||||| || |||
Sbjct: 199 aagcgtatcagtggcttgatctatgaggagactcgtggtgttctcaagatctttcttgag 258
Query: 193 aacgttattcgtgatgctgttacctacactgagcacgctcgccgtaagactgtgacggcg 252
|| || ||||||||||||||||||||||||||||| ||| | | |||||||| || ||
Sbjct: 259 aatgtgattcgtgatgctgttacctacactgagcatgctaggaggaagactgttactgcc 318
Query: 253 atggatgttgtttacgctctcaagaggcagggcaggaccctctatggtttcggtggttag 312
|||||||| || || ||||||||||| ||||| ||||| |||||||| || || ||||||
Sbjct: 319 atggatgtggtgtatgctctcaagagacagggaaggacactctatggatttgggggttag 378
>gnl|LJGI|BE122552 homologue to UniRef100_UPI00001D6F72 Cluster: histone cluster 4,
H4; n=2; Mus musculus|Rep: histone cluster 4, H4 - Mus
musculus, partial (79%)
Length = 372
Score = 155 bits (78), Expect = 2e-37
Identities = 183/218 (83%)
Strand = Plus / Plus
Query: 13 ggaaaaggaggcaagggtttgggtaaaggaggagcgaagcgtcaccggaaggttctgagg 72
||||||||||||||||| || || || |||||||| || || ||||| ||||| ||| |
Sbjct: 137 ggaaaaggaggcaagggattaggaaagggaggagcaaaacgacaccgtaaggtgctgcgc 196
Query: 73 gataacatccagggaatcaccaagcctgcgattcgccgtctcgcaaggcgtggcggtgtg 132
|| ||||||||||| || |||||||| |||||||| ||| | || | | ||||| |||
Sbjct: 197 gacaacatccagggcataaccaagccggcgattcggcgtttggcgcgtaggggcggcgtg 256
Query: 133 aagcgtatcagcggtctcatctatgaggaaactcgcggtgttctcaagatcttcctcgag 192
|||||||||||||| || ||||||||||| || ||||| || ||||||||||| ||||||
Sbjct: 257 aagcgtatcagcggccttatctatgaggagacacgcggcgtgctcaagatctttctcgag 316
Query: 193 aacgttattcgtgatgctgttacctacactgagcacgc 230
|| || || || ||||||||||||||||||||||||||
Sbjct: 317 aatgtgatccgggatgctgttacctacactgagcacgc 354
>gnl|LJGI|TC80187 homologue to UniRef100_UPI000050340F Cluster: Histone H4 [Contains:
Osteogenic growth peptide (OGP)].; n=1; Rattus
norvegicus|Rep: Histone H4 [Contains: Osteogenic growth
peptide (OGP)]. - Rattus norvegicus, complete
Length = 492
Score = 139 bits (70), Expect = 1e-32
Identities = 241/298 (80%)
Strand = Plus / Plus
Query: 13 ggaaaaggaggcaagggtttgggtaaaggaggagcgaagcgtcaccggaaggttctgagg 72
||||| ||||||||||| ||||| || |||||||| ||| | || || ||||| ||| |
Sbjct: 28 ggaaagggaggcaagggattgggaaagggaggagcaaagaggcatcgcaaggtgctgcgc 87
Query: 73 gataacatccagggaatcaccaagcctgcgattcgccgtctcgcaaggcgtggcggtgtg 132
|| ||||||||||||||||| ||||| |||||||| | | || || | ||||| |||
Sbjct: 88 gacaacatccagggaatcacgaagccggcgattcggagattggcgagaagaggcggagtg 147
Query: 133 aagcgtatcagcggtctcatctatgaggaaactcgcggtgttctcaagatcttcctcgag 192
||| | ||||| || | |||||||||||||| | || || |||||||| || ||||||
Sbjct: 148 aagaggatcagtggcttgatctatgaggaaaccagaggggtgctcaagatttttctcgag 207
Query: 193 aacgttattcgtgatgctgttacctacactgagcacgctcgccgtaagactgtgacggcg 252
|| || ||||||||||| ||||| ||||| ||||| || | | |||||||| || ||
Sbjct: 208 aatgtgattcgtgatgcggttacatacaccgagcatgcgaggaggaagactgttactgct 267
Query: 253 atggatgttgtttacgctctcaagaggcagggcaggaccctctatggtttcggtggtt 310
|||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||
Sbjct: 268 atggatgttgtttatgctcttaagaggcagggaaggaccctctatggattcgggggtt 325
>gnl|LJGI|TC76382 homologue to UniRef100_UPI000050340F Cluster: Histone H4 [Contains:
Osteogenic growth peptide (OGP)].; n=1; Rattus
norvegicus|Rep: Histone H4 [Contains: Osteogenic growth
peptide (OGP)]. - Rattus norvegicus, complete
Length = 534
Score = 119 bits (60), Expect = 1e-26
Identities = 183/224 (81%)
Strand = Plus / Plus
Query: 76 aacatccagggaatcaccaagcctgcgattcgccgtctcgcaaggcgtggcggtgtgaag 135
||||||||||| ||||| ||||| |||||||| | || || ||| | |||||||| |||
Sbjct: 125 aacatccagggcatcacgaagccggcgattcggaggctggcgaggagaggcggtgtcaag 184
Query: 136 cgtatcagcggtctcatctatgaggaaactcgcggtgttctcaagatcttcctcgagaac 195
| ||||||||| | ||||||||||| ||| | || || || ||||| ||| | ||||||
Sbjct: 185 aggatcagcggtttgatctatgaggagactaggggagtgctgaagattttcttggagaac 244
Query: 196 gttattcgtgatgctgttacctacactgagcacgctcgccgtaagactgtgacggcgatg 255
|| ||||||||||| || || ||||| ||||| ||| | | ||||| ||||| || |||
Sbjct: 245 gtgattcgtgatgcggtgacttacacggagcatgctaggaggaagacggtgactgctatg 304
Query: 256 gatgttgtttacgctctcaagaggcagggcaggaccctctatgg 299
||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct: 305 gatgtggtttatgctctcaagaggcagggaagaaccctctatgg 348
>gnl|LJGI|TC70944 homologue to UniRef100_UPI000050340F Cluster: Histone H4 [Contains:
Osteogenic growth peptide (OGP)].; n=1; Rattus
norvegicus|Rep: Histone H4 [Contains: Osteogenic growth
peptide (OGP)]. - Rattus norvegicus, complete
Length = 495
Score = 117 bits (59), Expect = 4e-26
Identities = 218/271 (80%)
Strand = Plus / Plus
Query: 40 ggaggagcgaagcgtcaccggaaggttctgagggataacatccagggaatcaccaagcct 99
|||||||| ||| | ||| ||||||| ||| | || ||||||||||| ||||| |||||
Sbjct: 98 ggaggagccaagaggcacaggaaggtgctgcgcgacaacatccagggcatcacgaagccg 157
Query: 100 gcgattcgccgtctcgcaaggcgtggcggtgtgaagcgtatcagcggtctcatctatgag 159
|||||||| | | || ||| | || || |||||| | ||||| || | |||||||||
Sbjct: 158 gcgattcggaggttggcgaggagaggtggcgtgaagaggatcagtgggttgatctatgag 217
Query: 160 gaaactcgcggtgttctcaagatcttcctcgagaacgttattcgtgatgctgttacctac 219
|| ||| | ||||| | ||||||||| | ||||| || ||||||||||| || || |||
Sbjct: 218 gagactaggggtgtgttgaagatcttcttggagaatgtgattcgtgatgcggtgacgtac 277
Query: 220 actgagcacgctcgccgtaagactgtgacggcgatggatgttgtttacgctctcaagagg 279
|| ||||| ||| | | ||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 278 acggagcatgctaggaggaagactgtgactgctatggatgttgtttatgctctcaagagg 337
Query: 280 cagggcaggaccctctatggtttcggtggtt 310
||||| ||||| |||||||| ||||| ||||
Sbjct: 338 cagggaaggactctctatggattcggaggtt 368
>gnl|LJGI|GO024544 similar to UniRef100_UPI000065EF81 Cluster: Homolog of Homo sapiens
"H2A histone family, member X (H2AFX), mRNA; n=1;
Takifugu rubripes|Rep: Homolog of Homo sapiens "H2A
histone family, member X (H2AFX), mRNA - Takifugu
rubripes, partial (23%)
Length = 650
Score = 95.6 bits (48), Expect = 2e-19
Identities = 141/172 (81%)
Strand = Plus / Plus
Query: 139 atcagcggtctcatctatgaggaaactcgcggtgttctcaagatcttcctcgagaacgtt 198
||||||||||||||||||||||| |||||| |||| | ||||||| |||||||||||
Sbjct: 449 atcagcggtctcatctatgaggagactcgcagtgtgttgtagatctttctcgagaacgtg 508
Query: 199 attcgtgatgctgttacctacactgagcacgctcgccgtaagactgtgacggcgatggat 258
|| | |||||| | ||||||||||||||| | | |||| |||| || ||||||
Sbjct: 509 atctgcgatgctatgacctacactgagcacaccaagtggaagatgatgaccgccatggat 568
Query: 259 gttgtttacgctctcaagaggcagggcaggaccctctatggtttcggtggtt 310
| ||||| ||||||||||||||||||||||||||||| || || |||||||
Sbjct: 569 atcgtttatgctctcaagaggcagggcaggaccctctacggatttggtggtt 620