Miyakogusa Predicted Gene
- Lj4g3v2023890.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2023890.1 tr|B9IM52|B9IM52_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_578659 PE=4
SV=1,50,0.00000000009,seg,NULL,CUFF.50166.1
(914 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC82370 homologue to UniRef100_Q492H9 Cluster: NADH deh... 555 e-157
gnl|LJGI|TC80049 weakly similar to UniRef100_A7R2P1 Cluster: Chr... 278 6e-74
gnl|LJGI|TC81045 weakly similar to UniRef100_UPI0000141A8E Clust... 56 4e-07
>gnl|LJGI|TC82370 homologue to UniRef100_Q492H9 Cluster: NADH dehydrogenase I chain
E; n=1; Candidatus Blochmannia pennsylvanicus str.
BPEN|Rep: NADH dehydrogenase I chain E - Blochmannia
pennsylvanicus (strain BPEN), partial (7%)
Length = 537
Score = 555 bits (280), Expect = e-157
Identities = 280/280 (100%)
Strand = Plus / Plus
Query: 635 tgatggaggggaaccgggtttgcgggtgggttctgtcgggtttgttcgttttggggtcga 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgatggaggggaaccgggtttgcgggtgggttctgtcgggtttgttcgttttggggtcga 60
Query: 695 gctcgatcgggtcgaaagtggagcggttgatggacggtgaggattcgattggagttgagg 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcgatcgggtcgaaagtggagcggttgatggacggtgaggattcgattggagttgagg 120
Query: 755 ataaagcggttttgatagtttcgtacggattcatggtgctgtggagttatgtgattatga 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ataaagcggttttgatagtttcgtacggattcatggtgctgtggagttatgtgattatga 180
Query: 815 cagtgttctactgccattgtagaaaacagcatccagttaaggaagctcaacctgatcctg 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cagtgttctactgccattgtagaaaacagcatccagttaaggaagctcaacctgatcctg 240
Query: 875 atgaactacctctacaacaagtcaacaactctctgtaatg 914
||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgaactacctctacaacaagtcaacaactctctgtaatg 280
>gnl|LJGI|TC80049 weakly similar to UniRef100_A7R2P1 Cluster: Chromosome undetermined
scaffold_438, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_438,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (15%)
Length = 605
Score = 278 bits (140), Expect = 6e-74
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 187 gcccgcatccaccgcctcgaatccctcgcccaccacgcccccacccgcttcgaagcccgc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gcccgcatccaccgcctcgaatccctcgcccaccacgcccccacccgcttcgaagcccgc 454
Query: 247 cacgtctggcgcgagtcccgccacgacgcctcctcacttctccgtgtcaaagcactcttc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cacgtctggcgcgagtcccgccacgacgcctcctcacttctccgtgtcaaagcactcttc 514
Query: 307 gcaatcccctccttcttcct 326
||||||||||||||||||||
Sbjct: 515 gcaatcccctccttcttcct 534
Score = 186 bits (94), Expect = 2e-46
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 atgtgtgaatcggagggagtgttgttatcgtggtgccgcgtttccctttccccactcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 atgtgtgaatcggagggagtgttgttatcgtggtgccgcgtttccctttccccactcaaa 268
Query: 61 ctcatcttcgaatcactccaaatcctctcttcca 94
||||||||||||||||||||||||||||||||||
Sbjct: 269 ctcatcttcgaatcactccaaatcctctcttcca 302
>gnl|LJGI|TC81045 weakly similar to UniRef100_UPI0000141A8E Cluster: tetra-peptide
repeat homeobox-like (TPRXL) on chromosome 3; n=1; Homo
sapiens|Rep: tetra-peptide repeat homeobox-like (TPRXL)
on chromosome 3 - Homo sapiens, partial (19%)
Length = 1052
Score = 56.0 bits (28), Expect = 4e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 649 cgggtttgcgggtgggttctgtcgggtttgttcgttttgg 688
|||||||||||||||||| |||||||| |||| |||||||
Sbjct: 674 cgggtttgcgggtgggttttgtcgggtctgtttgttttgg 713