Miyakogusa Predicted Gene

Lj4g3v2000920.5
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v2000920.5 Non Chatacterized Hit- tr|I1Q7K5|I1Q7K5_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,34.87,2e-19,DUF566,Protein of unknown function DUF566; FAMILY NOT
NAMED,NULL; seg,NULL,CUFF.50076.5
         (462 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC76976 weakly similar to UniRef100_A7PFN8 Cluster: Chr...   165   3e-40

>gnl|LJGI|TC76976 weakly similar to UniRef100_A7PFN8 Cluster: Chromosome chr11
           scaffold_14, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr11 scaffold_14, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (20%)
          Length = 739

 Score =  165 bits (83), Expect = 3e-40
 Identities = 218/263 (82%)
 Strand = Plus / Plus

                                                                       
Query: 71  ttttgaatgatcaaatgacctacctggatgactgggctgtaattgaaactgatcatgttg 130
           ||||||||||||||||| ||||||| ||||| ||||||    |||| || ||||||||||
Sbjct: 5   ttttgaatgatcaaatggcctaccttgatgaatgggctacgcttgagacagatcatgttg 64

                                                                       
Query: 131 atgctctatctggggctatagaagacttagaggccagcactcttcgtcttccactaactg 190
           | |||||||| || ||| | ||||| || ||||| ||||| |||||||||||  ||||| 
Sbjct: 65  acgctctatccggtgctgtggaagatttggaggcgagcacccttcgtcttcctgtaacta 124

                                                                       
Query: 191 gaggggcgaaggcagatagtgagcatttgaaggctgctatctgttcagctgttgatgtta 250
           |||| || | || ||||| |||||||||||||| ||||||||||  |||||||||||| |
Sbjct: 125 gaggagcaatggtagatattgagcatttgaaggttgctatctgtcaagctgttgatgtca 184

                                                                       
Query: 251 tgcaagcaacaggatctgcaatctacccttttctctcacgggtgaaggacatgaataatt 310
           |||||||||  || ||||||||   | ||||  |||||| |||| ||| ||||||| |||
Sbjct: 185 tgcaagcaatggggtctgcaattcgctctttattctcacaggtggagggcatgaatgatt 244

                                  
Query: 311 tagtttctgaagttgctgttgta 333
           || |||||| |||||||||||||
Sbjct: 245 taatttctggagttgctgttgta 267