Miyakogusa Predicted Gene
- Lj4g3v2000890.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2000890.1 tr|D7U1D4|D7U1D4_VITVI Translation initiation
factor IF-3 OS=Vitis vinifera GN=VIT_11s0037g00520 PE=,69.96,0,no
description,Translation initiation factor 3, N-terminal; no
description,Translation initiation fa,CUFF.50075.1
(750 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|DC597438 similar to UniRef100_A7PFP1 Cluster: Translati... 878 0.0
gnl|LJGI|TC79246 similar to UniRef100_A7PFP1 Cluster: Translatio... 470 e-132
gnl|LJGI|DC595816 similar to UniRef100_Q4TAZ8 Cluster: Chromosom... 331 4e-90
>gnl|LJGI|DC597438 similar to UniRef100_A7PFP1 Cluster: Translation initiation factor
IF-3; n=1; Vitis vinifera|Rep: Translation initiation
factor IF-3 - Vitis vinifera (Grape), partial (21%)
Length = 543
Score = 878 bits (443), Expect = 0.0
Identities = 450/451 (99%), Gaps = 1/451 (0%)
Strand = Plus / Plus
Query: 1 atggctggcatcaccagcgtcccattcaaactcttctacacctccaccacaccctcacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 atggctggcatcaccagcgtcccattcaaactcttctacacctccaccacaccctcacct 153
Query: 61 tcatctctcttctcttcctctgattccaaactctttgctcgctttcccctctctcacaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tcatctctcttctcttcctctgattccaaactctttgctcgctttcccctctctcacaat 213
Query: 121 ccccactccatcaaattcgaccctctcccccatcccccacacgcaatcgtcacctcccgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ccccactccatcaaattcgaccctctcccccatcccccacacgcaatcgtcacctcccgc 273
Query: 181 tacggtggcggcggtccccgcccttccggcgacttcagaaagcgccaggctcaggccgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tacggtggcggcggtccccgcccttccggcgacttcagaaagcgccaggctcaggccgag 333
Query: 241 tccgaagatgaacaagctctcgacctttccaaactcaagtcagctactgtgaggctcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tccgaagatgaacaagctctcgacctttccaaactcaagtcagctactgtgaggctcatt 393
Query: 301 gatgagaagcagaacatggttggagttgtgtctaggagccaggccattcaaatggctgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gatgagaagcagaacatggttggagttgtgtctaggagccaggccattcaaatggctgat 453
Query: 361 gatgctcagcttgacttggtaatagtatccccagaggcagatcctcctgttgttaaaata 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 454 gatgctcagcttgacttggtaatagtatccccagaggcagatcctcctgttgtt-aaata 512
Query: 421 atggattacagtaaatatagatatgaacaac 451
|||||||||||||||||||||||||||||||
Sbjct: 513 atggattacagtaaatatagatatgaacaac 543
>gnl|LJGI|TC79246 similar to UniRef100_A7PFP1 Cluster: Translation initiation factor
IF-3; n=1; Vitis vinifera|Rep: Translation initiation
factor IF-3 - Vitis vinifera (Grape), partial (39%)
Length = 1105
Score = 470 bits (237), Expect = e-132
Identities = 249/253 (98%)
Strand = Plus / Plus
Query: 494 ggatggatttgaaggagctcaaaatgggatacaacatagatcaacatgattattctgtgc 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatggatttgaaggagctcaaaatgggatacaacatagatcaacatgattattctgtgc 60
Query: 554 gtttgagagctgcacgcaagtttttgacagatggtgataaggttaaggtcatagtaaacc 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtttgagagctgcacgcaagtttttgacagatggtgataaggttaaggtcatagtaaacc 120
Query: 614 ttaaaggtcgtgaaaatgaattcaggaatattgctattgagcttattaaacgtttccaga 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 121 ttaaaggtcgtgaaaatgaattcaggaatattgctattgagcttattaaacgtttcccga 180
Query: 674 acgatgttggggagcttggaacagaggaggctaaaagcttccgtgacagaaacatcttca 733
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 181 ccgatgttggggagcttggaacagaggaggctgaaagcttccgtgaccgaaacatcttca 240
Query: 734 tacttttggttcc 746
|||||||||||||
Sbjct: 241 tacttttggttcc 253
>gnl|LJGI|DC595816 similar to UniRef100_Q4TAZ8 Cluster: Chromosome 14 SCAF7218 whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep:, partial (1%)
Length = 211
Score = 331 bits (167), Expect = 4e-90
Identities = 198/207 (95%), Gaps = 1/207 (0%)
Strand = Plus / Plus
Query: 1 atggctggcatcaccagcgtcccattcaaactcttctacacctccaccacaccctcacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 atggctggcatcaccagcgtcccattcaaactcttctacacctccaccacaccctcacct 64
Query: 61 tcatctctcttctcttcctctgattccaaactctttgctcgctttcccctctctcacaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tcatctctcttctcttcctctgattccaaactctttgctcgctttcccctctctcacaat 124
Query: 121 cccc-actccatcaaattcgaccctctcccccatcccccacacgcaatcgtcacctcccg 179
|||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ccccgggggggtgaaattcgaccctctcccccatcccccacacgcaatcgtcacctcccc 184
Query: 180 ctacggtggcggcggtccccgcccttc 206
|||||||||||||||||||||||||||
Sbjct: 185 ctacggtggcggcggtccccgcccttc 211