Miyakogusa Predicted Gene
- Lj4g3v1987840.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v1987840.1 tr|D7M2J7|D7M2J7_ARALL F-box family protein
OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT_352454,32.26,8e-19,RNI-like,NULL; no description,NULL;
LRR_6,NULL; LRR_1,Leucine-rich repeat; Leucine-rich repeat - CC
,gene.g55958.t1.1
(807 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57273 similar to UniRef100_A7PFP9 Cluster: Chromosome... 1600 0.0
gnl|LJGI|TC81844 similar to UniRef100_A7PFP9 Cluster: Chromosome... 180 9e-45
gnl|LJGI|AV771368 similar to UniRef100_A7PFP9 Cluster: Chromosom... 137 1e-31
gnl|LJGI|AV770351 homologue to UniRef100_Q91313 Cluster: Ryanodi... 64 1e-09
>gnl|LJGI|TC57273 similar to UniRef100_A7PFP9 Cluster: Chromosome chr11 scaffold_14,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_14, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (93%)
Length = 1264
Score = 1600 bits (807), Expect = 0.0
Identities = 807/807 (100%)
Strand = Plus / Plus
Query: 1 atgcttgtctgcaaatcatggttcagcgccttcaaggaaccctctcttcactctgtcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 atgcttgtctgcaaatcatggttcagcgccttcaaggaaccctctcttcactctgtcttc 251
Query: 61 aacctcgaccccctcttcgactcgccccgcgagttgcctcgctggtggtcccccgaattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aacctcgaccccctcttcgactcgccccgcgagttgcctcgctggtggtcccccgaattc 311
Query: 121 gaggccaaaatcgattccatgcttcgctctgttgttcaatggacccatatcttcctcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gaggccaaaatcgattccatgcttcgctctgttgttcaatggacccatatcttcctcacc 371
Query: 181 cagatccgtattcgtcactgctctgatcgctccctcgctttggtcgccgaaagatgccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cagatccgtattcgtcactgctctgatcgctccctcgctttggtcgccgaaagatgccca 431
Query: 241 aatcttgaggtgttgtcaatcagaagctgccctcatgttactgatgattctatctctagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aatcttgaggtgttgtcaatcagaagctgccctcatgttactgatgattctatctctagg 491
Query: 301 attgctgttaattgtccaaagcttagggaattggacatcagctattgttatgatgtaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 attgctgttaattgtccaaagcttagggaattggacatcagctattgttatgatgtaaca 551
Query: 361 cataagtcattggctctgattggaagaaattgccccaatcttaaggttctgaagagaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cataagtcattggctctgattggaagaaattgccccaatcttaaggttctgaagagaaat 611
Query: 421 ctcatgaactggcttgatccttctcagcacgttgggattgttcctgatgaatatctaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ctcatgaactggcttgatccttctcagcacgttgggattgttcctgatgaatatctaaat 671
Query: 481 gcttgtccgcaagacggggatactgaggctgctgcaattgcaaggtccatgcctcatcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gcttgtccgcaagacggggatactgaggctgctgcaattgcaaggtccatgcctcatcta 731
Query: 541 gagtggcttgagattaggttctccaagttgtcagctaaaggcctcaatttgatatgtcag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gagtggcttgagattaggttctccaagttgtcagctaaaggcctcaatttgatatgtcag 791
Query: 601 aggtgtcctaaccttgagtttttggatctttccgggtgtgctaacttaactagtcgagac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aggtgtcctaaccttgagtttttggatctttccgggtgtgctaacttaactagtcgagac 851
Query: 661 attgctaatgcatcttccagtttggcacacttgaaagacatcaaaaagcctaatttctac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 attgctaatgcatcttccagtttggcacacttgaaagacatcaaaaagcctaatttctac 911
Query: 721 attccaaggtctgtctttcacactgaaaggtatggacattggcaattgtatgatgagaga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 attccaaggtctgtctttcacactgaaaggtatggacattggcaattgtatgatgagaga 971
Query: 781 tttcagacagatgttttccgaatttga 807
|||||||||||||||||||||||||||
Sbjct: 972 tttcagacagatgttttccgaatttga 998
>gnl|LJGI|TC81844 similar to UniRef100_A7PFP9 Cluster: Chromosome chr11 scaffold_14,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_14, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 462
Score = 180 bits (91), Expect = 9e-45
Identities = 122/131 (93%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 675 ttccagtttggcacacttgaaagacatcaaaaagcctaatttctacattccaaggtctgt 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttccagtttggcacacttgaaagacatcaaaaagcctaatttctacattccaaggtctgt 60
Query: 735 ctttcacactgaaaggtatggacattggcaattgtatg-atgagagatttcagacagatg 793
|||||||||||||||||| ||| |||| | |||| | |||||||||||||||||||||
Sbjct: 61 ctttcacactgaaaggtaaggaacatggccaatgtaagaatgagagatttcagacagatg 120
Query: 794 ttttccgaatt 804
||| |||||||
Sbjct: 121 tttcccgaatt 131
>gnl|LJGI|AV771368 similar to UniRef100_A7PFP9 Cluster: Chromosome chr11 scaffold_14,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_14, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 342
Score = 137 bits (69), Expect = 1e-31
Identities = 78/81 (96%)
Strand = Plus / Minus
Query: 727 aggtctgtctttcacactgaaaggtatggacattggcaattgtatgatgagagatttcag 786
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 340 aggtctgtctttcacactgaaaggtatggaccttggccattgtatgatgagagatttcag 281
Query: 787 acagatgttttccgaatttga 807
|||||||||||||| ||||||
Sbjct: 280 acagatgttttccggatttga 260
>gnl|LJGI|AV770351 homologue to UniRef100_Q91313 Cluster: Ryanodine receptor alpha
isoform; n=1; Rana catesbeiana|Rep: Ryanodine receptor
alpha, partial (0%)
Length = 265
Score = 63.9 bits (32), Expect = 1e-09
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 760 tggcaattgtatgatgagagatttcagacagatgttttccgaatttga 807
|||| |||||||||||||||||||||| | |||||||| |||||||||
Sbjct: 265 tggccattgtatgatgagagatttcagtctgatgtttttcgaatttga 218