Miyakogusa Predicted Gene
- Lj4g3v1983490.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v1983490.1 tr|G7JGQ4|G7JGQ4_MEDTR Eukaryotic translation
initiation factor 5A-1 OS=Medicago truncatula
GN=MTR_4,46.09,4e-18,eIF_5A: translation elongation factor
IF5A,Translation elongation factor IF5A;
IF5A_HYPUSINE,Transla,CUFF.50045.1
(438 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP057255 homologue to UniRef100_Q945F4 Cluster: Eukaryo... 668 0.0
gnl|LJGI|TC67187 homologue to UniRef100_A6YGE9 Cluster: Translat... 232 1e-60
gnl|LJGI|TC60723 homologue to UniRef100_A6YGE9 Cluster: Translat... 232 1e-60
gnl|LJGI|TC57704 homologue to UniRef100_Q945F4 Cluster: Eukaryot... 170 5e-42
gnl|LJGI|TC60132 homologue to UniRef100_Q71F50 Cluster: Eukaryot... 168 2e-41
gnl|LJGI|AU088753 similar to UniRef100_Q945F4 Cluster: Eukaryoti... 159 2e-38
gnl|LJGI|BW598541 similar to UniRef100_A6YGE9 Cluster: Translati... 119 1e-26
gnl|LJGI|TC67467 homologue to UniRef100_Q945F4 Cluster: Eukaryot... 94 9e-19
>gnl|LJGI|BP057255 homologue to UniRef100_Q945F4 Cluster: Eukaryotic translation
initiation factor 5A-2; n=1; Medicago sativa|Rep:
Eukaryotic translation initiation factor 5A-2 - Medicago
sativa (Alfalfa), partial (80%)
Length = 509
Score = 668 bits (337), Expect = 0.0
Identities = 341/343 (99%)
Strand = Plus / Minus
Query: 96 catcgtcatcaggtccaggccttgcaaggttgttgaagtttccacatcaaaaacaggcaa 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 catcgtcatcaggtccaggccttgcaaggttgttgaagtttccacatcaaaaacaggcaa 450
Query: 156 gcatggacatgcaaagtgccactttgtcgccattgatgttttcaatgggagaaagcttga 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gcatggacatgcaaagtgccactttgtcgccattgatgttttcaatgggagaaagcttga 390
Query: 216 agatattgttccttcatcccacaactgtgatgttccacacgtgaatcgcactgattatca 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agatattgttccttcatcccacaactgtgatgttccacacgtgaatcgcactgattatca 330
Query: 276 gctgattgatatctctgaagatggttttgtgagtctgttgactgacaatggaggtaccaa 335
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 329 gctgattgatatctctgaagatggttttgtgagtctgttgactgacnatggaggtaccaa 270
Query: 336 ggatgatctgaagcttcccactgatgagacactgcttgctcagattaaagatggatttaa 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggatgatctgaagcttcccactgatgagacactgcttgctcagattaaagatggatttaa 210
Query: 396 tgaagggaaagatcttgtggtttctgtcatgtctgcaatggga 438
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 209 tgaagggaaagatcttgtggtttctgtcatgtctgcnatggga 167
>gnl|LJGI|TC67187 homologue to UniRef100_A6YGE9 Cluster: Translation initiation
factor; n=1; Carica papaya|Rep: Translation initiation
factor - Carica papaya (Papaya), complete
Length = 777
Score = 232 bits (117), Expect = 1e-60
Identities = 357/437 (81%)
Strand = Plus / Plus
Query: 1 atgtctgacgaagagcaccagttcgattctcatgcggattccggagcctccaagacttat 60
||||||||||| |||||||| ||||| || | || || ||||||||||||| || ||
Sbjct: 86 atgtctgacgaggagcaccatttcgagtccaaggccgacgccggagcctccaaaacctac 145
Query: 61 cctatgcaagctggtaccaatcgcaaaaatggctacatcgtcatcaggtccaggccttgc 120
||| ||||| ||||||| |||||||| ||||||||| ||||| | | | || |||
Sbjct: 146 cctcaacaagccggtaccatccgcaaaaacggctacatcaacatcaagaaccgcccctgc 205
Query: 121 aaggttgttgaagtttccacatcaaaaacaggcaagcatggacatgcaaagtgccacttt 180
|||||||||||||||||||| || || || || ||||| || ||||| ||||||||||||
Sbjct: 206 aaggttgttgaagtttccacttccaagactgggaagcacggtcatgctaagtgccacttt 265
Query: 181 gtcgccattgatgttttcaatgggagaaagcttgaagatattgttccttcatcccacaac 240
|| | |||||| | |||| ||| | |||||||| |||||||||||||| || || ||
Sbjct: 266 gttggaattgatatcttcactggcaagaagcttgaggatattgttccttcttctcataat 325
Query: 241 tgtgatgttccacacgtgaatcgcactgattatcagctgattgatatctctgaagatggt 300
||||||||||| || |||| ||| |||||||| ||||| |||||||| ||||| |||||
Sbjct: 326 tgtgatgttcctcatgtgactcgtactgattaccagctcattgatatttctgaggatgga 385
Query: 301 tttgtgagtctgttgactgacaatggaggtaccaaggatgatctgaagcttcccactgat 360
||||||||||| | ||||| | ||| ||||||||||||||||| |||||||| ||||||
Sbjct: 386 tttgtgagtcttcttactgaaagtggtggtaccaaggatgatctcaagcttcctactgat 445
Query: 361 gagacactgcttgctcagattaaagatggatttaatgaagggaaagatcttgtggtttct 420
|| | || || |||||||||| || |||||| ||| || ||||||||||| ||||||
Sbjct: 446 gatgctctcctcactcagattaaggagggatttgctgagggaaaagatcttgttgtttct 505
Query: 421 gtcatgtctgcaatggg 437
||||||||||| |||||
Sbjct: 506 gtcatgtctgctatggg 522
>gnl|LJGI|TC60723 homologue to UniRef100_A6YGE9 Cluster: Translation initiation
factor; n=1; Carica papaya|Rep: Translation initiation
factor - Carica papaya (Papaya), complete
Length = 818
Score = 232 bits (117), Expect = 1e-60
Identities = 357/437 (81%)
Strand = Plus / Plus
Query: 1 atgtctgacgaagagcaccagttcgattctcatgcggattccggagcctccaagacttat 60
||||||||||| |||||||| ||||| || | || || ||||||||||||| || ||
Sbjct: 90 atgtctgacgaggagcaccatttcgagtccaaggccgacgccggagcctccaaaacctac 149
Query: 61 cctatgcaagctggtaccaatcgcaaaaatggctacatcgtcatcaggtccaggccttgc 120
||| ||||| ||||||| |||||||| ||||||||| ||||| | | | || |||
Sbjct: 150 cctcaacaagccggtaccatccgcaaaaacggctacatcaacatcaagaaccgcccctgc 209
Query: 121 aaggttgttgaagtttccacatcaaaaacaggcaagcatggacatgcaaagtgccacttt 180
|||||||||||||||||||| || || || || ||||| || ||||| ||||||||||||
Sbjct: 210 aaggttgttgaagtttccacttccaagactgggaagcacggtcatgctaagtgccacttt 269
Query: 181 gtcgccattgatgttttcaatgggagaaagcttgaagatattgttccttcatcccacaac 240
|| | |||||| | |||| ||| | |||||||| |||||||||||||| || || ||
Sbjct: 270 gttggaattgatatcttcactggcaagaagcttgaggatattgttccttcttctcataat 329
Query: 241 tgtgatgttccacacgtgaatcgcactgattatcagctgattgatatctctgaagatggt 300
||||||||||| || |||| ||| |||||||| ||||| |||||||| ||||| |||||
Sbjct: 330 tgtgatgttcctcatgtgactcgtactgattaccagctcattgatatttctgaggatgga 389
Query: 301 tttgtgagtctgttgactgacaatggaggtaccaaggatgatctgaagcttcccactgat 360
||||||||||| | ||||| | ||| ||||||||||||||||| |||||||| ||||||
Sbjct: 390 tttgtgagtcttcttactgaaagtggtggtaccaaggatgatctcaagcttcctactgat 449
Query: 361 gagacactgcttgctcagattaaagatggatttaatgaagggaaagatcttgtggtttct 420
|| | || || |||||||||| || |||||| ||| || ||||||||||| ||||||
Sbjct: 450 gatgctctcctcactcagattaaggagggatttgctgagggaaaagatcttgttgtttct 509
Query: 421 gtcatgtctgcaatggg 437
||||||||||| |||||
Sbjct: 510 gtcatgtctgctatggg 526
>gnl|LJGI|TC57704 homologue to UniRef100_Q945F4 Cluster: Eukaryotic translation
initiation factor 5A-2; n=1; Medicago sativa|Rep:
Eukaryotic translation initiation factor 5A-2 - Medicago
sativa (Alfalfa), complete
Length = 827
Score = 170 bits (86), Expect = 5e-42
Identities = 293/362 (80%)
Strand = Plus / Plus
Query: 1 atgtctgacgaagagcaccagttcgattctcatgcggattccggagcctccaagacttat 60
|||||||||||||||||||| ||||| || | || || |||| || |||||||| |||
Sbjct: 44 atgtctgacgaagagcaccacttcgagtccaaggctgacgccggcgcatccaagacctat 103
Query: 61 cctatgcaagctggtaccaatcgcaaaaatggctacatcgtcatcaggtccaggccttgc 120
|| |||||| || ||| ||||| || || ||||| ||||||| | |||||| |||
Sbjct: 104 ccgcagcaagccggaaccgtccgcaagaacggttacattgtcatcaagaacaggccctgc 163
Query: 121 aaggttgttgaagtttccacatcaaaaacaggcaagcatggacatgcaaagtgccacttt 180
||||||||||| ||||| || || ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 164 aaggttgttgaggtttctacttccaaaactggcaagcatggacatgcgaagtgtcacttt 223
Query: 181 gtcgccattgatgttttcaatgggagaaagcttgaagatattgttccttcatcccacaac 240
|| || ||||| | |||| || | ||||||||| |||||||| || || ||||| |||
Sbjct: 224 gttgctattgacatcttcaccggcaaaaagcttgaggatattgtcccatcttcccataac 283
Query: 241 tgtgatgttccacacgtgaatcgcactgattatcagctgattgatatctctgaagatggt 300
|||||| | || || || ||||| |||||||| ||||| ||||||||||| || |||||
Sbjct: 284 tgtgatatccctcatgtcaatcgtactgattaccagcttattgatatctcagaggatgga 343
Query: 301 tttgtgagtctgttgactgacaatggaggtaccaaggatgatctgaagcttcccactgat 360
|||||||||||| |||||||| ||| | ||| |||||||| || |||||||| || |||
Sbjct: 344 tttgtgagtctgctgactgactctggtgatactaaggatgaccttaagcttcctaccgat 403
Query: 361 ga 362
||
Sbjct: 404 ga 405
>gnl|LJGI|TC60132 homologue to UniRef100_Q71F50 Cluster: Eukaryotic translation
initiation factor 5A isoform II; n=1; Hevea
brasiliensis|Rep: Eukaryotic translation initiation
factor 5A isoform II - Hevea brasiliensis (Para rubber
tree), complete
Length = 739
Score = 168 bits (85), Expect = 2e-41
Identities = 283/349 (81%)
Strand = Plus / Plus
Query: 41 ccggagcctccaagacttatcctatgcaagctggtaccaatcgcaaaaatggctacatcg 100
|||||||||||||||| |||||| |||||| || |||| ||||||| || |||||||
Sbjct: 123 ccggagcctccaagacctatcctcagcaagccggcaccatccgcaaaagcggttacatcg 182
Query: 101 tcatcaggtccaggccttgcaaggttgttgaagtttccacatcaaaaacaggcaagcatg 160
|||||| | | || |||||||||||||| ||||| || || || || || |||||||
Sbjct: 183 tcatcaagggtcgtccctgcaaggttgttgaggtttcaacctccaagactggtaagcatg 242
Query: 161 gacatgcaaagtgccactttgtcgccattgatgttttcaatgggagaaagcttgaagata 220
| ||||| |||||||||||||| || |||||| |||||| || | ||||||||| ||||
Sbjct: 243 gtcatgctaagtgccactttgttgcaattgatattttcactgccaaaaagcttgaggata 302
Query: 221 ttgttccttcatcccacaactgtgatgttccacacgtgaatcgcactgattatcagctga 280
||||||| || |||||||| ||||||||||| || |||||||| ||||| || ||| |||
Sbjct: 303 ttgttccctcttcccacaattgtgatgttcctcatgtgaatcgtactgactaccagttga 362
Query: 281 ttgatatctctgaagatggttttgtgagtctgttgactgacaatggaggtaccaaggatg 340
||||||| |||| ||||| ||| |||| ||| | ||||| ||||| ||||||||||
Sbjct: 363 ttgatattgctgaggatggatttctgagcctgcttactgaaaatgggaacaccaaggatg 422
Query: 341 atctgaagcttcccactgatgagacactgcttgctcagattaaagatgg 389
| || ||||| || ||||||||| | || ||| ||||||| || |||||
Sbjct: 423 acctcaagctccctactgatgaggctctactttctcagataaaggatgg 471
>gnl|LJGI|AU088753 similar to UniRef100_Q945F4 Cluster: Eukaryotic translation
initiation factor 5A-2; n=1; Medicago sativa|Rep:
Eukaryotic translation initiation factor 5A-2 - Medicago
sativa (Alfalfa), complete
Length = 717
Score = 159 bits (80), Expect = 2e-38
Identities = 291/362 (80%)
Strand = Plus / Plus
Query: 1 atgtctgacgaagagcaccagttcgattctcatgcggattccggagcctccaagacttat 60
|||||||||||| ||||||| ||||| || | || || |||| || |||||||| |||
Sbjct: 23 atgtctgacgaanagcaccacttcgagtccaaggctgacgccggcgcatccaagacctat 82
Query: 61 cctatgcaagctggtaccaatcgcaaaaatggctacatcgtcatcaggtccaggccttgc 120
|| |||||| || ||| ||||| || || ||||| ||||||| | |||||| |||
Sbjct: 83 ccgcagcaagccggaaccgtccgcaagaacggttacattgtcatcaagaacaggccctgc 142
Query: 121 aaggttgttgaagtttccacatcaaaaacaggcaagcatggacatgcaaagtgccacttt 180
||||||||||| ||||| || || ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 143 aaggttgttgaggtttctacttccaaaactggcaagcatggacatgcgaagtgtcacttt 202
Query: 181 gtcgccattgatgttttcaatgggagaaagcttgaagatattgttccttcatcccacaac 240
|| || ||||| | |||| || | ||||||||| |||||||| || || ||||| |||
Sbjct: 203 gttgctattgacatcttcaccggcaaaaagcttgaggatattgtcccatcttcccataac 262
Query: 241 tgtgatgttccacacgtgaatcgcactgattatcagctgattgatatctctgaagatggt 300
|||||| | || || || ||||| |||||||| ||||| ||||||||||| | |||||
Sbjct: 263 tgtgatatccctcatgtcaatcgtactgattaccagcttattgatatctcanaggatgga 322
Query: 301 tttgtgagtctgttgactgacaatggaggtaccaaggatgatctgaagcttcccactgat 360
|||||||||||| |||||||| ||| | ||| |||||||| || |||||||| || |||
Sbjct: 323 tttgtgagtctgctgactgactctggtgatactaaggatgaccttaagcttcctaccgat 382
Query: 361 ga 362
||
Sbjct: 383 ga 384
>gnl|LJGI|BW598541 similar to UniRef100_A6YGE9 Cluster: Translation initiation factor;
n=1; Carica papaya|Rep: Translation initiation factor -
Carica papaya (Papaya), partial (72%)
Length = 499
Score = 119 bits (60), Expect = 1e-26
Identities = 177/216 (81%)
Strand = Plus / Plus
Query: 211 cttgaagatattgttccttcatcccacaactgtgatgttccacacgtgaatcgcactgat 270
||||| |||||||||||||| || || || ||||||||||| || |||| ||| ||||||
Sbjct: 284 cttgacgatattgttccttcttctcataattgtgatgttcctcatgtgactcgaactgat 343
Query: 271 tatcagctgattgatatctctgaagatggttttgtgagtctgttgactgacaatggaggt 330
|| | || |||||||| ||||| ||||| ||||||||||| | ||||| | ||| |||
Sbjct: 344 tacaatctcattgatatttctgaggatggatttgtgagtcttcttactgaaagtggtggt 403
Query: 331 accaaggatgatctgaagcttcccactgatgagacactgcttgctcagattaaagatgga 390
|||||||||||||| |||||||| |||||||| | || || |||| ||||| || |||
Sbjct: 404 accaaggatgatctcaagcttcctactgatgatgctctcctcactcatattaaggacgga 463
Query: 391 tttaatgaagggaaagatcttgtggtttctgtcatg 426
||| ||| || ||| ||||||| ||||||||||||
Sbjct: 464 tttgctgatggaaaacatcttgttgtttctgtcatg 499
>gnl|LJGI|TC67467 homologue to UniRef100_Q945F4 Cluster: Eukaryotic translation
initiation factor 5A-2; n=1; Medicago sativa|Rep:
Eukaryotic translation initiation factor 5A-2 - Medicago
sativa (Alfalfa), partial (81%)
Length = 691
Score = 93.7 bits (47), Expect = 9e-19
Identities = 155/191 (81%)
Strand = Plus / Plus
Query: 1 atgtctgacgaagagcaccagttcgattctcatgcggattccggagcctccaagacttat 60
|||||||||||||||||||| ||||| || | || || |||| || |||||||| |||
Sbjct: 19 atgtctgacgaagagcaccacttcgagtccaaggctgacgccggcgcatccaagacctat 78
Query: 61 cctatgcaagctggtaccaatcgcaaaaatggctacatcgtcatcaggtccaggccttgc 120
|| |||||| || ||| ||||| || || ||||| ||||||| | |||||| |||
Sbjct: 79 ccgcagcaagccggaaccgtccgcaagaacggttacattgtcatcaagaacaggccctgc 138
Query: 121 aaggttgttgaagtttccacatcaaaaacaggcaagcatggacatgcaaagtgccacttt 180
||||||||||| ||||| || || ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 139 aaggttgttgaggtttctacttccaaaactggcaagcatggacatgcgaagtgtcacttt 198
Query: 181 gtcgccattga 191
|| || |||||
Sbjct: 199 gttgctattga 209