Miyakogusa Predicted Gene

Lj4g3v1983470.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1983470.1 Non Chatacterized Hit- tr|B9T628|B9T628_RICCO
Zinc finger protein, putative OS=Ricinus communis
GN=R,68.75,0.0002,seg,NULL,
gene.Ljchr4_pseudomol_20120830.path1.gene5543.1
         (132 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP067204 homologue to UniRef100_A7PGW1 Cluster: Chromos...   111   1e-24
gnl|LJGI|TC71386 similar to UniRef100_A7PGW1 Cluster: Chromosome...   111   1e-24
gnl|LJGI|BP065508 similar to UniRef100_A7PGW1 Cluster: Chromosom...   103   2e-22
gnl|LJGI|BP054572                                                      92   9e-19
gnl|LJGI|TC58628 similar to UniRef100_A7PGW1 Cluster: Chromosome...    62   8e-10
gnl|LJGI|TC70974 similar to UniRef100_A7P3B2 Cluster: Chromosome...    50   3e-06

>gnl|LJGI|BP067204 homologue to UniRef100_A7PGW1 Cluster: Chromosome chr17
           scaffold_16, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr17 scaffold_16, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (7%)
          Length = 486

 Score =  111 bits (56), Expect = 1e-24
 Identities = 68/72 (94%)
 Strand = Plus / Minus

                                                                       
Query: 10  gtttactttggtatgtttgatgccttattggctgctgaggagcttcctgaagagtacagg 69
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 390 gtttactttggtatgcttgatgccttattggctgctgaggagcttcctgaagagtatagg 331

                       
Query: 70  aactgcaatcag 81
            || ||||||||
Sbjct: 330 gaccgcaatcag 319



 Score = 67.9 bits (34), Expect = 1e-11
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                         
Query: 87  ttgtatcacaagtgtggactatgtggctcttacaatactcgggtaa 132
           ||||||||||| |||||| | |||||||||||||||||||||||||
Sbjct: 267 ttgtatcacaaatgtggattttgtggctcttacaatactcgggtaa 222


>gnl|LJGI|TC71386 similar to UniRef100_A7PGW1 Cluster: Chromosome chr17 scaffold_16,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr17 scaffold_16, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (86%)
          Length = 4206

 Score =  111 bits (56), Expect = 1e-24
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                        
Query: 10   gtttactttggtatgtttgatgccttattggctgctgaggagcttcctgaagagtacagg 69
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3717 gtttactttggtatgcttgatgccttattggctgctgaggagcttcctgaagagtatagg 3776

                        
Query: 70   aactgcaatcag 81
             || ||||||||
Sbjct: 3777 gaccgcaatcag 3788



 Score = 67.9 bits (34), Expect = 1e-11
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                          
Query: 87   ttgtatcacaagtgtggactatgtggctcttacaatactcgggtaa 132
            ||||||||||| |||||| | |||||||||||||||||||||||||
Sbjct: 3840 ttgtatcacaaatgtggattttgtggctcttacaatactcgggtaa 3885


>gnl|LJGI|BP065508 similar to UniRef100_A7PGW1 Cluster: Chromosome chr17 scaffold_16,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_16, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (6%)
          Length = 377

 Score =  103 bits (52), Expect = 2e-22
 Identities = 55/56 (98%)
 Strand = Plus / Minus

                                                                   
Query: 10  gtttactttggtatgtttgatgccttattggctgctgaggagcttcctgaagagta 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtttactttggtatgcttgatgccttattggctgctgaggagcttcctgaagagta 247


>gnl|LJGI|BP054572 
          Length = 515

 Score = 91.7 bits (46), Expect = 9e-19
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                         
Query: 87  ttgtatcacaagtgtggactatgtggctcttacaatactcgggtaa 132
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  ttgtatcacaagtgtggactatgtggctcttacaatactcgggtaa 124


>gnl|LJGI|TC58628 similar to UniRef100_A7PGW1 Cluster: Chromosome chr17 scaffold_16,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_16, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (14%)
          Length = 862

 Score = 61.9 bits (31), Expect = 8e-10
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 10  gtttactttggtatgtttgatgccttattggctgctgaggagcttcctgaagagtacag 68
           ||||||||||||||| ||||||| || |||||||||||||  ||||| ||||| |||||
Sbjct: 324 gtttactttggtatgcttgatgctttgttggctgctgaggtacttcccgaagaatacag 382


>gnl|LJGI|TC70974 similar to UniRef100_A7P3B2 Cluster: Chromosome chr1 scaffold_5,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_5, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (22%)
          Length = 1013

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 10  gtttactttggtatgtttgatgccttattggctgctgaggagcttcctgaaga 62
           ||||||||||| ||| |||||||  |||||||| |||||||||| || |||||
Sbjct: 640 gtttactttggcatgcttgatgctctattggcttctgaggagctcccagaaga 692