Miyakogusa Predicted Gene
- Lj4g3v1983420.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v1983420.1 tr|I1P547|I1P547_ORYGL Ubiquitin
carboxyl-terminal hydrolase OS=Oryza glaberrima PE=3
SV=1,40.54,1e-17,UCH,Peptidase C19, ubiquitin carboxyl-terminal
hydrolase 2; Cysteine proteinases,NULL; seg,NULL,CUFF.50041.1
(1464 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC70980 weakly similar to UniRef100_A5B4K5 Cluster: Ubi... 656 0.0
gnl|LJGI|GO012545 weakly similar to UniRef100_A5B4K5 Cluster: Ub... 402 e-111
gnl|LJGI|TC68350 weakly similar to UniRef100_A5B4K5 Cluster: Ubi... 283 2e-75
gnl|LJGI|BP055958 weakly similar to UniRef100_Q3EJ66 Cluster: Mu... 98 2e-19
>gnl|LJGI|TC70980 weakly similar to UniRef100_A5B4K5 Cluster: Ubiquitin
carboxyl-terminal hydrolase; n=1; Vitis vinifera|Rep:
Ubiquitin carboxyl-terminal hydrolase - Vitis vinifera
(Grape), partial (9%)
Length = 710
Score = 656 bits (331), Expect = 0.0
Identities = 331/331 (100%)
Strand = Plus / Plus
Query: 1134 tcaagatggtaaaagagatcaaatgcataatagtttaatgagtatgcttactcgaggatt 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaagatggtaaaagagatcaaatgcataatagtttaatgagtatgcttactcgaggatt 60
Query: 1194 ggaggagacagttgttgcacgttgggatgatgtagaaatagcttcatctcgggtcatgga 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggaggagacagttgttgcacgttgggatgatgtagaaatagcttcatctcgggtcatgga 120
Query: 1254 ctcaaggaatgacaaaattaaggacattggatatgttggggatgaatgggatgaagaatt 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctcaaggaatgacaaaattaaggacattggatatgttggggatgaatgggatgaagaatt 180
Query: 1314 agataaggggaagaggaagaagttaaggaccttcaaacacagctttgatggaccaaatat 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agataaggggaagaggaagaagttaaggaccttcaaacacagctttgatggaccaaatat 240
Query: 1374 tttccaagaaattgctactgagaaattcaagtcgaaaagggccaagttagaccactctag 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttccaagaaattgctactgagaaattcaagtcgaaaagggccaagttagaccactctag 300
Query: 1434 ctcagcgaaccctccatttaggatatgattc 1464
|||||||||||||||||||||||||||||||
Sbjct: 301 ctcagcgaaccctccatttaggatatgattc 331
>gnl|LJGI|GO012545 weakly similar to UniRef100_A5B4K5 Cluster: Ubiquitin
carboxyl-terminal hydrolase; n=1; Vitis vinifera|Rep:
Ubiquitin carboxyl-terminal hydrolase - Vitis vinifera
(Grape), partial (8%)
Length = 560
Score = 402 bits (203), Expect = e-111
Identities = 265/285 (92%), Gaps = 3/285 (1%)
Strand = Plus / Plus
Query: 1140 tggtaaaagagatcaaatgcataatagtttaatgagtatgcttactcgaggattggagga 1199
|||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 259 tggtgaaagagatcaaatgcataatagtttaatgagtatgctaactcgaggtttggagga 318
Query: 1200 gacagttgttgcacgttgggatgatgtagaaatagcttcatctcgggtcatggactcaag 1259
|||||| |||||||||||||||||| ||||||||||||||||||||| | | || |||
Sbjct: 319 gacagtcgttgcacgttgggatgatatagaaatagcttcatctcgggccctagagacaaa 378
Query: 1260 gaat---gacaaaattaaggacattggatatgttggggatgaatgggatgaagaattaga 1316
|| | || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gagtagtgagaaggttaaggacattggatatgttggggatgaatgggatgaagaattaga 438
Query: 1317 taaggggaagaggaagaagttaaggaccttcaaacacagctttgatggaccaaatatttt 1376
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 439 taaggggaagaggaagaagttaaggaccttcaaacacaactttgatgggccaaatatttt 498
Query: 1377 ccaagaaattgctactgagaaattcaagtcgaaaagggccaagtt 1421
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ccaagaaattgctactgagaaattcaagtcgaaaagggccaagtt 543
Score = 71.9 bits (36), Expect = 1e-11
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 947 gtgtatcaagttgtcttgaaagtaaagcaaccaaggctggttatagaa 994
||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 93 gtgtatcgagttgctttgaaagtaaagcaaccaaggctggttatagaa 140
>gnl|LJGI|TC68350 weakly similar to UniRef100_A5B4K5 Cluster: Ubiquitin
carboxyl-terminal hydrolase; n=1; Vitis vinifera|Rep:
Ubiquitin carboxyl-terminal hydrolase - Vitis vinifera
(Grape), partial (4%)
Length = 617
Score = 283 bits (143), Expect = 2e-75
Identities = 149/151 (98%)
Strand = Plus / Plus
Query: 1271 ttaaggacattggatatgttggggatgaatgggatgaagaattagataaggggaagagga 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 ttaaggacattggatatgttggggatgaatgggatgaagaattagataaggggaagagga 79
Query: 1331 agaagttaaggaccttcaaacacagctttgatggaccaaatattttccaagaaattgcta 1390
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 80 agaagttaaggaccttcaaacacaactttgatgggccaaatattttccaagaaattgcta 139
Query: 1391 ctgagaaattcaagtcgaaaagggccaagtt 1421
|||||||||||||||||||||||||||||||
Sbjct: 140 ctgagaaattcaagtcgaaaagggccaagtt 170
>gnl|LJGI|BP055958 weakly similar to UniRef100_Q3EJ66 Cluster: Multimodular
transpeptidase-transglycosylase; n=1; Bacillus
thuringiensis serovar israelensis ATCC 35646|Rep:
Multimodular transpeptidase-transglycosylase - Bacillus
thuringiensis serovar israelensis ATCC 35646, partial
(4%)
Length = 476
Score = 97.6 bits (49), Expect = 2e-19
Identities = 58/61 (95%)
Strand = Plus / Minus
Query: 1404 gtcgaaaagggccaagttagaccactctagctcagcgaaccctccatttaggatatgatt 1463
|||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 476 gtcgaaaaggcccaagttagaccactctagctcagcgcaccctccctttaggatatgatt 417
Query: 1464 c 1464
|
Sbjct: 416 c 416