Miyakogusa Predicted Gene

Lj4g3v1983310.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1983310.1 tr|A9TI05|A9TI05_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_145843,47.92,2e-18,no description,Cytochrome c oxidase,
subunit VIb; COX6B,Cytochrome c oxidase, subunit VIb,CUFF.50028.1
         (306 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC68041 similar to UniRef100_A7PFT5 Cluster: Chromosome...   607   e-173
gnl|LJGI|TC60070 similar to UniRef100_A7PFT5 Cluster: Chromosome...   579   e-165
gnl|LJGI|GO032658 similar to UniRef100_A7PFT5 Cluster: Chromosom...   165   2e-40

>gnl|LJGI|TC68041 similar to UniRef100_A7PFT5 Cluster: Chromosome chr11 scaffold_14,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr11 scaffold_14, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (88%)
          Length = 662

 Score =  607 bits (306), Expect = e-173
 Identities = 306/306 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgctggaagcttacgctgcaggaaaccacgacaaaatcaacgctgatgtcctctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   atggcgctggaagcttacgctgcaggaaaccacgacaaaatcaacgctgatgtcctctcc 61

                                                                       
Query: 61  aaagctagggaagcttgctacaaggctcgtgatgctttctacgcgtgtctggataaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  aaagctagggaagcttgctacaaggctcgtgatgctttctacgcgtgtctggataaggaa 121

                                                                       
Query: 121 tctgacaagaaacccacagagattgcatcagtgggcttgatttaccctgcagaatgcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tctgacaagaaacccacagagattgcatcagtgggcttgatttaccctgcagaatgcaaa 181

                                                                       
Query: 181 cgatcgagggatgagttcgttaaacaatgccgatcttcatgggtgaagcatttcgatagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cgatcgagggatgagttcgttaaacaatgccgatcttcatgggtgaagcatttcgatagg 241

                                                                       
Query: 241 caatactgccagaacaagagggttcagaggcttttggatgacaaaggttcaaggagaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 caatactgccagaacaagagggttcagaggcttttggatgacaaaggttcaaggagaggg 301

                 
Query: 301 gtatag 306
           ||||||
Sbjct: 302 gtatag 307


>gnl|LJGI|TC60070 similar to UniRef100_A7PFT5 Cluster: Chromosome chr11 scaffold_14,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr11 scaffold_14, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (92%)
          Length = 896

 Score =  579 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 8   tggaagcttacgctgcaggaaaccacgacaaaatcaacgctgatgtcctctccaaagcta 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   tggaagcttacgctgcaggaaaccacgacaaaatcaacgctgatgtcctctccaaagcta 63

                                                                       
Query: 68  gggaagcttgctacaaggctcgtgatgctttctacgcgtgtctggataaggaatctgaca 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  gggaagcttgctacaaggctcgtgatgctttctacgcgtgtctggataaggaatctgaca 123

                                                                       
Query: 128 agaaacccacagagattgcatcagtgggcttgatttaccctgcagaatgcaaacgatcga 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 agaaacccacagagattgcatcagtgggcttgatttaccctgcagaatgcaaacgatcga 183

                                                                       
Query: 188 gggatgagttcgttaaacaatgccgatcttcatgggtgaagcatttcgataggcaatact 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gggatgagttcgttaaacaatgccgatcttcatgggtgaagcatttcgataggcaatact 243

                                                               
Query: 248 gccagaacaagagggttcagaggcttttggatgacaaaggttcaaggagagg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gccagaacaagagggttcagaggcttttggatgacaaaggttcaaggagagg 295


>gnl|LJGI|GO032658 similar to UniRef100_A7PFT5 Cluster: Chromosome chr11 scaffold_14,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr11 scaffold_14, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (29%)
          Length = 234

 Score =  165 bits (83), Expect = 2e-40
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                       
Query: 217 tcatgggtgaagcatttcgataggcaatactgccagaacaagagggttcagaggcttttg 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcatgggtgaagcatttcgataggcaatactgccagaacaagagggttcagaggcttttg 60

                                  
Query: 277 gatgacaaaggttcaaggagagg 299
           |||||||||||||||||||||||
Sbjct: 61  gatgacaaaggttcaaggagagg 83