Miyakogusa Predicted Gene

Lj4g3v1958780.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1958780.1 Non Chatacterized Hit- tr|C3ZLX0|C3ZLX0_BRAFL
Putative uncharacterized protein OS=Branchiostoma
flor,39.47,3e-19,INTEGRATOR COMPLEX SUBUNIT 11,NULL; CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR,NULL; Beta-Casp,,CUFF.49992.1
         (474 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC77082 similar to UniRef100_A7P3V4 Cluster: Chromosome...   143   1e-33

>gnl|LJGI|TC77082 similar to UniRef100_A7P3V4 Cluster: Chromosome chr1 scaffold_5,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_5, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (24%)
          Length = 1351

 Score =  143 bits (72), Expect = 1e-33
 Identities = 85/88 (96%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                       
Query: 253 gctgggacagtaggacatagattaatgtcaggtaag-gccaccaaagttgatgtggatcc 311
           ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct: 10  gctgggacagtaggacatagattaatgtcaggtacctgccaccaaagttgatgtggatcc 69

                                       
Query: 312 tgatacacaaatagacgtgcgttgccag 339
           ||||||||||||||||||||||||||||
Sbjct: 70  tgatacacaaatagacgtgcgttgccag 97