Miyakogusa Predicted Gene

Lj4g3v1894860.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1894860.1 tr|E4Z7C1|E4Z7C1_OIKDI Whole genome shotgun
assembly, allelic scaffold set, scaffold scaffoldA_4168
,43.59,2.2,seg,NULL,CUFF.49957.1
         (262 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC75974                                                      392   e-109

>gnl|LJGI|TC75974 
          Length = 456

 Score =  392 bits (198), Expect = e-109
 Identities = 224/235 (95%)
 Strand = Plus / Plus

                                                                       
Query: 28  atttcccttcaaattcagtacactccctggcgacgtaatttgttgctgccctgtatctcc 87
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 148 atttcccttcaaattcagtacactccttggcgacgtaatttgttgctgccctgtatctcc 207

                                                                       
Query: 88  tatctgactggtgcggtctattcttttttctatactgtgcactcagcctgcataggcgct 147
           |||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||
Sbjct: 208 tatctgactggtgcggtctattctttttcctgtactgtgtactcagcctgcataggcgct 267

                                                                       
Query: 148 ggtttagtggtgtgggctgtggaatttctgttacatggcatttgcgatttccnnnnnnng 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||       |
Sbjct: 268 ggtttagtggtgtgggctgtggaatttctgttacatggcatttgcgatttcctttttttg 327

                                                                  
Query: 208 tttctttccagcttttcctccactaaacggtgttgtaggggaagatcagaatagg 262
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttctttccagcttttcctccactaaacggtgttgtaggggaagatcagaatagg 382