Miyakogusa Predicted Gene
- Lj4g3v1893170.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v1893170.1 Non Chatacterized Hit- tr|C0PG81|C0PG81_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,55.45,3e-19,seg,NULL;
GTP-BINDING PROTEIN 2,Nucleolar GTP-binding protein 2; GTP-BINDING
PROTEIN-RELATED,NULL,CUFF.49927.1
(371 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC71328 similar to UniRef100_A7P1K0 Cluster: Chromosome... 735 0.0
gnl|LJGI|TC69437 similar to UniRef100_A7P1K0 Cluster: Chromosome... 331 2e-90
gnl|LJGI|TC62417 similar to UniRef100_A7P1K0 Cluster: Chromosome... 329 7e-90
>gnl|LJGI|TC71328 similar to UniRef100_A7P1K0 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 1041
Score = 735 bits (371), Expect = 0.0
Identities = 371/371 (100%)
Strand = Plus / Plus
Query: 1 atgactgcagcaaagatggtacttcatgactggcagaggggtaaaattcccttttttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atgactgcagcaaagatggtacttcatgactggcagaggggtaaaattcccttttttgtt 450
Query: 61 cctcccccacagcaggaggacttgtccgaggaacctattgttaatggcttagatgtcgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cctcccccacagcaggaggacttgtccgaggaacctattgttaatggcttagatgtcgat 510
Query: 121 gatggcgttgatagtaaccaggcatctgctgctattaaagctattgcaaatgttctttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gatggcgttgatagtaaccaggcatctgctgctattaaagctattgcaaatgttctttca 570
Query: 181 tcccagcagcaaagtagtgtacctgttcagaaggatttatttactgagaatgagttggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tcccagcagcaaagtagtgtacctgttcagaaggatttatttactgagaatgagttggag 630
Query: 241 gaggaagctgataatctacttctgatctcaggggatagcccagatggagatgttctggac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gaggaagctgataatctacttctgatctcaggggatagcccagatggagatgttctggac 690
Query: 301 tctgatagcgacacatcagagcaggatccagacactgaggttccatatgagcagcctcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tctgatagcgacacatcagagcaggatccagacactgaggttccatatgagcagcctcat 750
Query: 361 tctgcttaaat 371
|||||||||||
Sbjct: 751 tctgcttaaat 761
>gnl|LJGI|TC69437 similar to UniRef100_A7P1K0 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (94%)
Length = 1648
Score = 331 bits (167), Expect = 2e-90
Identities = 221/239 (92%)
Strand = Plus / Plus
Query: 1 atgactgcagcaaagatggtacttcatgactggcagaggggtaaaattcccttttttgtt 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1310 atgactgccgcaaagatggtacttcatgactggcagaggggtaaaattccctttttcgtt 1369
Query: 61 cctcccccacagcaggaggacttgtccgaggaacctattgttaatggcttagatgtcgat 120
|||||||||| | ||| ||||||||||||||||||| ||||||||| | ||||||| |
Sbjct: 1370 cctcccccacgactggatgacttgtccgaggaacctaatgttaatggaattgatgtcgct 1429
Query: 121 gatggcgttgatagtaaccaggcatctgctgctattaaagctattgcaaatgttctttca 180
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 1430 gatggcgttgatagcaaccaagcatctgctgctattaaagctatcgcaaatgttctttca 1489
Query: 181 tcccagcagcaaagtagtgtacctgttcagaaggatttatttactgagaatgagttgga 239
|||||||| ||||| |||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 1490 tcccagcaacaaagaagtgtacctgttcagaaggatttatttagtgagaacgagttgga 1548
>gnl|LJGI|TC62417 similar to UniRef100_A7P1K0 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 762
Score = 329 bits (166), Expect = 7e-90
Identities = 226/246 (91%)
Strand = Plus / Plus
Query: 1 atgactgcagcaaagatggtacttcatgactggcagaggggtaaaattcccttttttgtt 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 atgactgctgcaaagatggtacttcatgactggcagaggggtaaaattcccttttttgtt 128
Query: 61 cctcccccacagcaggaggacttgtccgaggaacctattgttaatggcttagatgtcgat 120
|||||||||| || || ||||||||| ||||||||| ||||||||| | |||||||||
Sbjct: 129 cctcccccacggcttgatgacttgtccaaggaacctaatgttaatggaatcgatgtcgat 188
Query: 121 gatggcgttgatagtaaccaggcatctgctgctattaaagctattgcaaatgttctttca 180
|||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 189 gatggcgttgctagcaaccaggcatctgctgctattgaagctattgcaaatgttctttca 248
Query: 181 tcccagcagcaaagtagtgtacctgttcagaaggatttatttactgagaatgagttggag 240
|||||||| ||||| ||| | |||||||| ||||||||||||| ||||||||||||||||
Sbjct: 249 tcccagcatcaaagaagtttgcctgttcaaaaggatttatttagtgagaatgagttggag 308
Query: 241 gaggaa 246
| ||||
Sbjct: 309 ggggaa 314
Score = 63.9 bits (32), Expect = 6e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 301 tctgatagcgacacatcagagcaggatccagacactgagg 340
||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 351 tctgatagcgacacatctgagcaggatccagccactgagg 390