Miyakogusa Predicted Gene

Lj4g3v1881820.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1881820.1 tr|G7JFC5|G7JFC5_MEDTR Telomere-associated
protein RIF1 OS=Medicago truncatula GN=MTR_4g115340 PE=4 ,74.59,0,ARM
repeat,Armadillo-type fold; seg,NULL; TELOMERE-ASSOCIATED PROTEIN
(RIF1),NULL; Rif1_N,Rap1-inter,CUFF.49900.1
         (3078 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73508 similar to UniRef100_A7PF92 Cluster: Chromosome...   337   2e-91

>gnl|LJGI|TC73508 similar to UniRef100_A7PF92 Cluster: Chromosome chr11 scaffold_13,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr11 scaffold_13, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (18%)
          Length = 675

 Score =  337 bits (170), Expect = 2e-91
 Identities = 170/170 (100%)
 Strand = Plus / Plus

                                                                        
Query: 2855 atcactcatgcccctccatatcagagccaaccatcaatttttggaattctacatttgctc 2914
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    atcactcatgcccctccatatcagagccaaccatcaatttttggaattctacatttgctc 60

                                                                        
Query: 2915 aacaaattattttggatttccctccaagtcttcttcatgttttggacaagctatccagaa 2974
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   aacaaattattttggatttccctccaagtcttcttcatgttttggacaagctatccagaa 120

                                                              
Query: 2975 atggaaaattaaaactccagaagagaagtctaccatctctccaaaaatgt 3024
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  atggaaaattaaaactccagaagagaagtctaccatctctccaaaaatgt 170



 Score = 91.7 bits (46), Expect = 2e-17
 Identities = 52/54 (96%)
 Strand = Plus / Plus

                                                                  
Query: 3025 gagggtataattattgttggattcacccaaagaggtgccgccattaagttttaa 3078
            ||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 242  gagggtagaattattgttggattcacacaaagaggtgccgccattaagttttaa 295