Miyakogusa Predicted Gene

Lj4g3v1880850.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1880850.1 Non Chatacterized Hit- tr|C6SYG8|C6SYG8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.2865
PE=,91.58,0,YABBY,YABBY protein; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.49822.1
         (573 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62821 similar to UniRef100_A7PGA9 Cluster: Chromosome...    92   4e-18
gnl|LJGI|BP041062 homologue to UniRef100_Q6SS00 Cluster: YABBY-l...    60   2e-08

>gnl|LJGI|TC62821 similar to UniRef100_A7PGA9 Cluster: Chromosome chr6 scaffold_15,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_15, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (68%)
          Length = 765

 Score = 91.7 bits (46), Expect = 4e-18
 Identities = 130/158 (82%)
 Strand = Plus / Plus

                                                                       
Query: 331 cctcccgagaagaggcagcgtgtaccttctgcttataatcagttcataaaggaagaaatt 390
           ||||| |||||||| || ||||| ||||| |||||||||  |||||| ||||| ||||| 
Sbjct: 324 cctcctgagaagagacaacgtgttccttccgcttataataggttcattaaggaggaaata 383

                                                                       
Query: 391 cagaggatcaaggctaacaatcctgatatcagtcaccgagaagcgtttagcacagctgca 450
           || || ||||| || |  || || |||||||| ||| | ||||| ||||||||||| || 
Sbjct: 384 caaagaatcaaagccagtaacccagatatcagccacagggaagcatttagcacagcagcc 443

                                                 
Query: 451 aagaactgggcacattttcctcatattcattttgggct 488
           || ||||||||||||||||||||  |||| ||||||||
Sbjct: 444 aaaaactgggcacattttcctcacgttcactttgggct 481


>gnl|LJGI|BP041062 homologue to UniRef100_Q6SS00 Cluster: YABBY-like transcription
           factor GRAMINIFOLIA; n=1; Antirrhinum majus|Rep:
           YABBY-like transcription factor GRAMINIFOLIA -
           Antirrhinum majus (Garden snapdragon), partial (46%)
          Length = 550

 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 409 aatcctgatatcagtcaccgagaagcgtttagcacagctgcaaagaactgggcacatttt 468
           |||||||||||||| ||| |||| || |||||  | ||||||||||| ||||| ||||||
Sbjct: 346 aatcctgatatcagccacagagaggcttttagtgctgctgcaaagaattgggcccatttt 287

                         
Query: 469 cctcatattcattt 482
           || || ||||||||
Sbjct: 286 ccacacattcattt 273