Miyakogusa Predicted Gene
- Lj4g3v1880730.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v1880730.2 Non Chatacterized Hit- tr|F6HT74|F6HT74_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,33.01,0.000008,TPR_REGION,Tetratricopeptide repeat-containing
domain; TPR_11,NULL; TPR-like,NULL; no description,Te,CUFF.49825.2
(885 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66484 similar to UniRef100_A7QIP2 Cluster: Chromosome... 1746 0.0
gnl|LJGI|BW624601 similar to UniRef100_A9ALP5 Cluster: Transcrip... 745 0.0
gnl|LJGI|FS359927 similar to UniRef100_A7PF56 Cluster: Chromosom... 597 e-170
gnl|LJGI|TC66998 homologue to UniRef100_Q5Z5Q8 Cluster: Adsorpti... 143 2e-33
>gnl|LJGI|TC66484 similar to UniRef100_A7QIP2 Cluster: Chromosome chr9 scaffold_104,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_104, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (46%)
Length = 1290
Score = 1746 bits (881), Expect = 0.0
Identities = 884/885 (99%)
Strand = Plus / Plus
Query: 1 atgcttcttcaaagctcttcaactccgatcatgaactcgttccttcctcactcgaaggat 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 atgcttcttcaaatctcttcaactccgatcatgaactcgttccttcctcactcgaaggat 205
Query: 61 ccatctaccgaacccgaacaccttcatcggatcccgagaacccgatccgtcacgctttcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ccatctaccgaacccgaacaccttcatcggatcccgagaacccgatccgtcacgctttcg 265
Query: 121 ggttcctggtcgccgatcgaaggtcgccggagcagaatgacaagagcgctatcggaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggttcctggtcgccgatcgaaggtcgccggagcagaatgacaagagcgctatcggaaacc 325
Query: 181 gatctcaccgccgcaccgaagcggaagcctcccagccacggcctcttcgatgaggacgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gatctcaccgccgcaccgaagcggaagcctcccagccacggcctcttcgatgaggacgag 385
Query: 241 ggtaaagcgagcaccctcgctgcccgttcgagaacgacgtcgttgggtcctgcgttgttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggtaaagcgagcaccctcgctgcccgttcgagaacgacgtcgttgggtcctgcgttgttt 445
Query: 301 tctttctccgagctggaggaaggtgtgagcgggattggtgtaagggatgaaggtctgctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tctttctccgagctggaggaaggtgtgagcgggattggtgtaagggatgaaggtctgctg 505
Query: 361 gcgtcgcgtgtgttggttgagggtggaggcggaggcggaggaggccgcggcggtggatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gcgtcgcgtgtgttggttgagggtggaggcggaggcggaggaggccgcggcggtggatgg 565
Query: 421 gaccggagcgacggtggaggttctgggttttgggataagaatcatgggagtgatagtacg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaccggagcgacggtggaggttctgggttttgggataagaatcatgggagtgatagtacg 625
Query: 481 gacttgtattaccggacgatgatcgaagccaatccagggaacccgctttttcttagcaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gacttgtattaccggacgatgatcgaagccaatccagggaacccgctttttcttagcaac 685
Query: 541 tacgcaaggtacttgaaagaggttcgtttggactatgtgaaagcagaagagtattgtggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tacgcaaggtacttgaaagaggttcgtttggactatgtgaaagcagaagagtattgtggg 745
Query: 601 aaggcaattttggcgaatccaaatgatggggaagttatgtccatgtatgcagatttgata 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aaggcaattttggcgaatccaaatgatggggaagttatgtccatgtatgcagatttgata 805
Query: 661 tgggagagctataaggatgctactcgagctgagacatactatgatcaagcagtgaaagct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tgggagagctataaggatgctactcgagctgagacatactatgatcaagcagtgaaagct 865
Query: 721 tcccctgatgattgttatgttctagcatcatatgcacattttctttgggatgctgaggaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tcccctgatgattgttatgttctagcatcatatgcacattttctttgggatgctgaggaa 925
Query: 781 gacgatgatgtagagcaagaaaattcctctgaaaagtctctcagtttcttccatggagct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 gacgatgatgtagagcaagaaaattcctctgaaaagtctctcagtttcttccatggagct 985
Query: 841 gctgctccgccgcctcctccccctttagccgctgcttcttaaatt 885
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 gctgctccgccgcctcctccccctttagccgctgcttcttaaatt 1030
>gnl|LJGI|BW624601 similar to UniRef100_A9ALP5 Cluster: Transcriptional regulator,
LysR family; n=1; Burkholderia multivorans ATCC
17616|Rep: Transcriptional regulator, LysR family -
Burkholderia multivorans ATCC 17616, partial (5%)
Length = 522
Score = 745 bits (376), Expect = 0.0
Identities = 379/380 (99%)
Strand = Plus / Plus
Query: 1 atgcttcttcaaagctcttcaactccgatcatgaactcgttccttcctcactcgaaggat 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 atgcttcttcaaatctcttcaactccgatcatgaactcgttccttcctcactcgaaggat 202
Query: 61 ccatctaccgaacccgaacaccttcatcggatcccgagaacccgatccgtcacgctttcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ccatctaccgaacccgaacaccttcatcggatcccgagaacccgatccgtcacgctttcg 262
Query: 121 ggttcctggtcgccgatcgaaggtcgccggagcagaatgacaagagcgctatcggaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggttcctggtcgccgatcgaaggtcgccggagcagaatgacaagagcgctatcggaaacc 322
Query: 181 gatctcaccgccgcaccgaagcggaagcctcccagccacggcctcttcgatgaggacgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gatctcaccgccgcaccgaagcggaagcctcccagccacggcctcttcgatgaggacgag 382
Query: 241 ggtaaagcgagcaccctcgctgcccgttcgagaacgacgtcgttgggtcctgcgttgttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggtaaagcgagcaccctcgctgcccgttcgagaacgacgtcgttgggtcctgcgttgttt 442
Query: 301 tctttctccgagctggaggaaggtgtgagcgggattggtgtaagggatgaaggtctgctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctttctccgagctggaggaaggtgtgagcgggattggtgtaagggatgaaggtctgctg 502
Query: 361 gcgtcgcgtgtgttggttga 380
||||||||||||||||||||
Sbjct: 503 gcgtcgcgtgtgttggttga 522
>gnl|LJGI|FS359927 similar to UniRef100_A7PF56 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (37%)
Length = 696
Score = 597 bits (301), Expect = e-170
Identities = 301/301 (100%)
Strand = Plus / Minus
Query: 585 agaagagtattgtgggaaggcaattttggcgaatccaaatgatggggaagttatgtccat 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agaagagtattgtgggaaggcaattttggcgaatccaaatgatggggaagttatgtccat 492
Query: 645 gtatgcagatttgatatgggagagctataaggatgctactcgagctgagacatactatga 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gtatgcagatttgatatgggagagctataaggatgctactcgagctgagacatactatga 432
Query: 705 tcaagcagtgaaagcttcccctgatgattgttatgttctagcatcatatgcacattttct 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tcaagcagtgaaagcttcccctgatgattgttatgttctagcatcatatgcacattttct 372
Query: 765 ttgggatgctgaggaagacgatgatgtagagcaagaaaattcctctgaaaagtctctcag 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttgggatgctgaggaagacgatgatgtagagcaagaaaattcctctgaaaagtctctcag 312
Query: 825 tttcttccatggagctgctgctccgccgcctcctccccctttagccgctgcttcttaaat 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tttcttccatggagctgctgctccgccgcctcctccccctttagccgctgcttcttaaat 252
Query: 885 t 885
|
Sbjct: 251 t 251
Score = 291 bits (147), Expect = 4e-78
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 415 ggatgggaccggagcgacggtggaggttctgggttttgggataagaatcatgggagtgat 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ggatgggaccggagcgacggtggaggttctgggttttgggataagaatcatgggagtgat 637
Query: 475 agtacggacttgtattaccggacgatgatcgaagccaatccagggaacccgctttttctt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 agtacggacttgtattaccggacgatgatcgaagccaatccagggaacccgctttttctt 577
Query: 535 agcaactacgcaaggtacttgaaagag 561
|||||||||||||||||||||||||||
Sbjct: 576 agcaactacgcaaggtacttgaaagag 550
>gnl|LJGI|TC66998 homologue to UniRef100_Q5Z5Q8 Cluster: Adsorption protein-like;
n=1; Oryza sativa Japonica Group|Rep: Adsorption
protein-like - Oryza sativa subsp. japonica (Rice),
partial (10%)
Length = 809
Score = 143 bits (72), Expect = 2e-33
Identities = 129/148 (87%)
Strand = Plus / Minus
Query: 250 agcaccctcgctgcccgttcgagaacgacgtcgttgggtcctgcgttgttttctttctcc 309
|||||||||||||||| |||||||||||||| |||||||||| | |||||||||||||||
Sbjct: 221 agcaccctcgctgcccattcgagaacgacgttgttgggtcctactttgttttctttctcc 162
Query: 310 gagctggaggaaggtgtgagcgggattggtgtaagggatgaaggtctgctggcgtcgcgt 369
||| |||| |||| || || |||||||| || |||| ||||| ||| |||||||||||
Sbjct: 161 gagttggatgaagttgagacaaggattggtatatgggacgaagggctgttggcgtcgcgt 102
Query: 370 gtgttggttgagggtggaggcggaggcg 397
|| ||||||| ||| |||||||||||||
Sbjct: 101 gtcttggttgtgggaggaggcggaggcg 74