Miyakogusa Predicted Gene
- Lj4g3v1812480.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v1812480.1 tr|I3S6W2|I3S6W2_LOTJA Histone H2A OS=Lotus
japonicus PE=2 SV=1,98.5,0,HISTONEH2A,Histone H2A; no
description,Histone-fold; Histone 2A,Histone H2A; seg,NULL;
Histone-fold,,CUFF.49747.1
(402 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81273 homologue to UniRef100_A7P5K0 Cluster: Histone ... 755 0.0
gnl|LJGI|TC74241 homologue to UniRef100_A7P5K0 Cluster: Histone ... 190 5e-48
gnl|LJGI|TC63189 homologue to UniRef100_A5AKG7 Cluster: Histone ... 176 7e-44
gnl|LJGI|TC60753 homologue to UniRef100_Q8H7Y8 Cluster: Probable... 90 1e-17
gnl|LJGI|TC63694 homologue to UniRef100_Q8H7Y8 Cluster: Probable... 78 5e-14
gnl|LJGI|TC59007 homologue to UniRef100_Q8H7Y8 Cluster: Probable... 78 5e-14
>gnl|LJGI|TC81273 homologue to UniRef100_A7P5K0 Cluster: Histone H2A; n=1; Vitis
vinifera|Rep: Histone H2A - Vitis vinifera (Grape),
partial (90%)
Length = 475
Score = 755 bits (381), Expect = 0.0
Identities = 381/381 (100%)
Strand = Plus / Plus
Query: 1 atgtcgggaaagggagcgaaggggttgataacctccgccaacaacaaggacaaggacaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 atgtcgggaaagggagcgaaggggttgataacctccgccaacaacaaggacaaggacaag 154
Query: 61 gacaagaagaaacccacttctcgttcttcccgtgccggtcttcagtttccggttggaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gacaagaagaaacccacttctcgttcttcccgtgccggtcttcagtttccggttggaagg 214
Query: 121 atccaccggcttttgaagtcaagaaccacggctcatggtagagtgggagccacggctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atccaccggcttttgaagtcaagaaccacggctcatggtagagtgggagccacggctgct 274
Query: 181 gtctactctgctgctatcttggagtatctgactgctgaagtattggagctggctgggaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gtctactctgctgctatcttggagtatctgactgctgaagtattggagctggctgggaat 334
Query: 241 gctagcaaggatctcaaggttaagcgtattactcccaggcatctacaacttgctatccgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gctagcaaggatctcaaggttaagcgtattactcccaggcatctacaacttgctatccgc 394
Query: 301 ggtgatgaagaactggatacgctgattaaaggaacaattgctggaggaggtgttattcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggtgatgaagaactggatacgctgattaaaggaacaattgctggaggaggtgttattcct 454
Query: 361 catattcacaaatctctgatc 381
|||||||||||||||||||||
Sbjct: 455 catattcacaaatctctgatc 475
>gnl|LJGI|TC74241 homologue to UniRef100_A7P5K0 Cluster: Histone H2A; n=1; Vitis
vinifera|Rep: Histone H2A - Vitis vinifera (Grape),
complete
Length = 757
Score = 190 bits (96), Expect = 5e-48
Identities = 285/348 (81%)
Strand = Plus / Plus
Query: 51 caaggacaaggacaagaagaaacccacttctcgttcttcccgtgccggtcttcagtttcc 110
|||||||||||||||||||||| || |||||| || ||||| || ||||||||||| ||
Sbjct: 187 caaggacaaggacaagaagaaagccgtttctcgctcctcccgagctggtcttcagttccc 246
Query: 111 ggttggaaggatccaccggcttttgaagtcaagaaccacggctcatggtagagtgggagc 170
|||||| | || ||||| ||| |||| || || |||| || || ||||| || ||
Sbjct: 247 cgttggacgaattcaccgtcttctgaaatcgagggccactgccagcggaagagttggggc 306
Query: 171 cacggctgctgtctactctgctgctatcttggagtatctgactgctgaagtattggagct 230
||| ||||| || ||| ||||||| || | |||||| |||| || || || ||||||||
Sbjct: 307 caccgctgcggtatacgctgctgcgattctcgagtatttgacggcggaggttttggagct 366
Query: 231 ggctgggaatgctagcaaggatctcaaggttaagcgtattactcccaggcatctacaact 290
|||||||||||| ||||||||||| ||||| ||||| ||||| || |||||| | || ||
Sbjct: 367 ggctgggaatgcgagcaaggatctgaaggtgaagcgaattacccctaggcatttgcagct 426
Query: 291 tgctatccgcggtgatgaagaactggatacgctgattaaaggaacaattgctggaggagg 350
|| || ||||| ||||||||||| |||||||| || ||||| || ||||| || || ||
Sbjct: 427 ggccattcgcggagatgaagaacttgatacgctcatcaaagggacgattgcgggcggtgg 486
Query: 351 tgttattcctcatattcacaaatctctgatcaacaagtcttccaagga 398
||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 487 tgttattcctcatattcacaagtctctgatcaataaatcttccaagga 534
>gnl|LJGI|TC63189 homologue to UniRef100_A5AKG7 Cluster: Histone H2A; n=2; core
eudicotyledons|Rep: Histone H2A - Vitis vinifera
(Grape), partial (89%)
Length = 690
Score = 176 bits (89), Expect = 7e-44
Identities = 275/337 (81%)
Strand = Plus / Plus
Query: 62 acaagaagaaacccacttctcgttcttcccgtgccggtcttcagtttccggttggaagga 121
|||||||||||||||| |||||||||||| | || ||||||||||| || |||||| | |
Sbjct: 114 acaagaagaaacccacctctcgttcttccagagctggtcttcagttccctgttggacgaa 173
Query: 122 tccaccggcttttgaagtcaagaaccacggctcatggtagagtgggagccacggctgctg 181
| ||||| ||| ||||| |||| |||| |||| ||||| || || || ||||| |
Sbjct: 174 ttcaccgtcttctgaagacaagggtgtcggcgaatggaagagttggggcaacagctgcag 233
Query: 182 tctactctgctgctatcttggagtatctgactgctgaagtattggagctggctgggaatg 241
| ||| ||||||||||| ||||||| | ||||| || || |||||| |||| || ||||
Sbjct: 234 tttacactgctgctatcctggagtacttaactgcggaggtgttggagttggccggcaatg 293
Query: 242 ctagcaaggatctcaaggttaagcgtattactcccaggcatctacaacttgctatccgcg 301
| ||||||||||| ||||| ||||| ||||| || || ||||| || ||||| |||||||
Sbjct: 294 cgagcaaggatctgaaggtgaagcgcattaccccaagacatcttcagcttgcaatccgcg 353
Query: 302 gtgatgaagaactggatacgctgattaaaggaacaattgctggaggaggtgttattcctc 361
| || |||||||| ||||| || || |||||||| || ||||| || |||||||||||||
Sbjct: 354 gagacgaagaactagataccctcatcaaaggaactatagctggtggtggtgttattcctc 413
Query: 362 atattcacaaatctctgatcaacaagtcttccaagga 398
|||| ||||| ||||| |||||||| ||||| |||||
Sbjct: 414 atatccacaagtctcttatcaacaaatcttcaaagga 450
>gnl|LJGI|TC60753 homologue to UniRef100_Q8H7Y8 Cluster: Probable histone H2A variant
1; n=3; Oryza sativa|Rep: Probable histone H2A variant 1
- Oryza sativa subsp. japonica (Rice), partial (98%)
Length = 766
Score = 89.7 bits (45), Expect = 1e-17
Identities = 129/157 (82%)
Strand = Plus / Plus
Query: 230 tggctgggaatgctagcaaggatctcaaggttaagcgtattactcccaggcatctacaac 289
||||||||||||| ||||||||| | ||||| ||| | || ||||| |||||| | || |
Sbjct: 332 tggctgggaatgcgagcaaggatttgaaggtgaagaggataactcctaggcatttgcagc 391
Query: 290 ttgctatccgcggtgatgaagaactggatacgctgattaaaggaacaattgctggaggag 349
|||||||| | || ||||| || || ||||| ||||| ||||| || |||||||| || |
Sbjct: 392 ttgctatcaggggagatgaggagcttgataccctgatcaaagggactattgctggtggtg 451
Query: 350 gtgttattcctcatattcacaaatctctgatcaacaa 386
|||| |||||||| |||||||| || ||||||||||
Sbjct: 452 gtgtcattcctcacattcacaagtccttgatcaacaa 488
Score = 58.0 bits (29), Expect = 4e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 46 aaggacaaggacaaggacaagaagaaacccacttctcgttcttcccgtgccggtcttcag 105
|||||||| || || || ||||||| ||||||||||||||| || |||||||| |||||
Sbjct: 148 aaggacaaagataaagataagaagagacccacttctcgttcatctcgtgccggaattcag 207
Query: 106 tttcc 110
|||||
Sbjct: 208 tttcc 212
>gnl|LJGI|TC63694 homologue to UniRef100_Q8H7Y8 Cluster: Probable histone H2A variant
1; n=3; Oryza sativa|Rep: Probable histone H2A variant 1
- Oryza sativa subsp. japonica (Rice), partial (92%)
Length = 732
Score = 77.8 bits (39), Expect = 5e-14
Identities = 150/187 (80%)
Strand = Plus / Plus
Query: 200 tggagtatctgactgctgaagtattggagctggctgggaatgctagcaaggatctcaagg 259
|||| |||||||||||||| || ||||||||||||||||||| ||||||||||| ||||
Sbjct: 291 tggaatatctgactgctgaggtgctggagctggctgggaatgcaagcaaggatctgaagg 350
Query: 260 ttaagcgtattactcccaggcatctacaacttgctatccgcggtgatgaagaactggata 319
| ||| | || || || | || | || || |||||| | || |||||||| || || |
Sbjct: 351 tgaagaggatcacaccgcgtcacttgcagctcgctatcaggggagatgaagagcttgaca 410
Query: 320 cgctgattaaaggaacaattgctggaggaggtgttattcctcatattcacaaatctctga 379
| || || |||||||| |||||||| || ||||| || ||||| |||||||| || |||
Sbjct: 411 ccctcatcaaaggaaccattgctggtggtggtgtcatccctcacattcacaagtccttga 470
Query: 380 tcaacaa 386
|||||||
Sbjct: 471 tcaacaa 477
>gnl|LJGI|TC59007 homologue to UniRef100_Q8H7Y8 Cluster: Probable histone H2A variant
1; n=3; Oryza sativa|Rep: Probable histone H2A variant 1
- Oryza sativa subsp. japonica (Rice), partial (92%)
Length = 789
Score = 77.8 bits (39), Expect = 5e-14
Identities = 150/187 (80%)
Strand = Plus / Plus
Query: 200 tggagtatctgactgctgaagtattggagctggctgggaatgctagcaaggatctcaagg 259
|||| |||||||||||||| || ||||||||||||||||||| ||||||||||| ||||
Sbjct: 255 tggaatatctgactgctgaggtgctggagctggctgggaatgcaagcaaggatctgaagg 314
Query: 260 ttaagcgtattactcccaggcatctacaacttgctatccgcggtgatgaagaactggata 319
| ||| | || || || | || | || || |||||| | || |||||||| || || |
Sbjct: 315 tgaagaggatcacaccgcgtcacttgcagctcgctatcaggggagatgaagagcttgaca 374
Query: 320 cgctgattaaaggaacaattgctggaggaggtgttattcctcatattcacaaatctctga 379
| || || |||||||| |||||||| || ||||| || ||||| |||||||| || |||
Sbjct: 375 ccctcatcaaaggaaccattgctggtggtggtgtcatccctcacattcacaagtccttga 434
Query: 380 tcaacaa 386
|||||||
Sbjct: 435 tcaacaa 441