Miyakogusa Predicted Gene

Lj4g3v1787010.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1787010.1 Non Chatacterized Hit- tr|J3MXC7|J3MXC7_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB09G1,51.75,2e-18,seg,NULL; coiled-coil,NULL,CUFF.49740.1
         (1195 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73000 similar to UniRef100_Q6SJQ9 Cluster: TFIID comp...   394   e-109

>gnl|LJGI|TC73000 similar to UniRef100_Q6SJQ9 Cluster: TFIID component TAF2; n=1;
            Arabidopsis thaliana|Rep: TFIID component TAF2 -
            Arabidopsis thaliana (Mouse-ear cress), partial (3%)
          Length = 723

 Score =  394 bits (199), Expect = e-109
 Identities = 199/199 (100%)
 Strand = Plus / Plus

                                                                        
Query: 997  tcctcagtagacttgtcaagtaaaaaagaggaacctgaagtggatgttgcaaaacagctg 1056
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274  tcctcagtagacttgtcaagtaaaaaagaggaacctgaagtggatgttgcaaaacagctg 333

                                                                        
Query: 1057 aaatctgttgaacctagcgggtataattctcaatcagaattcagaaggatcgatgcaacc 1116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334  aaatctgttgaacctagcgggtataattctcaatcagaattcagaaggatcgatgcaacc 393

                                                                        
Query: 1117 aaacctgaggcatccgaaggtacatctggtgcaccgaaaattcgcattaaaatcaaaaac 1176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394  aaacctgaggcatccgaaggtacatctggtgcaccgaaaattcgcattaaaatcaaaaac 453

                               
Query: 1177 cgactgctcagcaagtaat 1195
            |||||||||||||||||||
Sbjct: 454  cgactgctcagcaagtaat 472



 Score =  387 bits (195), Expect = e-106
 Identities = 198/199 (99%)
 Strand = Plus / Plus

                                                                       
Query: 724 tcatctagtattatccatgataacaatattgatgctgatgcacgaagatatgttagcctt 783
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcatctagtattatccttgataacaatattgatgctgatgcacgaagatatgttagcctt 60

                                                                       
Query: 784 caaactctttcagcttcaagatttgatgttgatggaggatcattgggtaaagaaatttct 843
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caaactctttcagcttcaagatttgatgttgatggaggatcattgggtaaagaaatttct 120

                                                                       
Query: 844 gcacgagggaaagaaaaacacaaaagcaaggataagaaacggaagaaagaacaccgagat 903
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcacgagggaaagaaaaacacaaaagcaaggataagaaacggaagaaagaacaccgagat 180

                              
Query: 904 gatccagagtatttggagc 922
           |||||||||||||||||||
Sbjct: 181 gatccagagtatttggagc 199