Miyakogusa Predicted Gene
- Lj4g3v1683300.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v1683300.1 tr|Q6X9T2|Q6X9T2_HORVD SNAP25-like protein C
(Fragment) OS=Hordeum vulgare var. distichum PE=4
SV=1,52.38,1e-18,Helical region found in SNAREs,Target SNARE
coiled-coil domain; T_SNARE,Target SNARE coiled-coil dom,CUFF.49596.1
(918 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62699 similar to UniRef100_A7PDF9 Cluster: Chromosome... 1820 0.0
gnl|LJGI|TC57215 weakly similar to UniRef100_Q10Q25 Cluster: SNA... 281 4e-75
gnl|LJGI|TC65767 similar to UniRef100_A7P2H5 Cluster: Chromosome... 228 5e-59
gnl|LJGI|TC78644 similar to UniRef100_Q10Q25 Cluster: SNARE doma... 202 3e-51
gnl|LJGI|FS358773 similar to UniRef100_Q8CDN8 Cluster: Coiled-co... 80 3e-14
>gnl|LJGI|TC62699 similar to UniRef100_A7PDF9 Cluster: Chromosome chr17 scaffold_12,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_12, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (85%)
Length = 1414
Score = 1820 bits (918), Expect = 0.0
Identities = 918/918 (100%)
Strand = Plus / Plus
Query: 1 atgtttagttcaaagaaatctcctgtgaaggttgctaagcctagctctgttggtccggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atgtttagttcaaagaaatctcctgtgaaggttgctaagcctagctctgttggtccggtg 341
Query: 61 tatcctgttaaatccgggtcgaacccatttgattcggatgatgagggaaatgataacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tatcctgttaaatccgggtcgaacccatttgattcggatgatgagggaaatgataacaaa 401
Query: 121 aagtataattcctcacggaagacctcctcagaacgtgcacttgctacgctagaagttaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aagtataattcctcacggaagacctcctcagaacgtgcacttgctacgctagaagttaac 461
Query: 181 accaatccttttgatgacgttgatgatactaagaaaccttcatcatctttgtatgccgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 accaatccttttgatgacgttgatgatactaagaaaccttcatcatctttgtatgccgct 521
Query: 241 ccatccgctgacaggaacagatataggaatgattttcgtgaatctggtggagtagagaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ccatccgctgacaggaacagatataggaatgattttcgtgaatctggtggagtagagaat 581
Query: 301 cagtcggtgcaggaattggaaagttatgctgtttataaggctgaagagactacaaaatca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cagtcggtgcaggaattggaaagttatgctgtttataaggctgaagagactacaaaatca 641
Query: 361 gtcaacaattgtttgaagatagcagagaacataagagaggatgctaccaagactttagtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gtcaacaattgtttgaagatagcagagaacataagagaggatgctaccaagactttagtc 701
Query: 421 actcttcaccaacagggtgagcaaattaccaggagtcactatgttgctgctgacattgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 actcttcaccaacagggtgagcaaattaccaggagtcactatgttgctgctgacattgat 761
Query: 481 catgacttaagtcggggagaaaagcttttgggaagccttggtggcctcttctccaaaact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 catgacttaagtcggggagaaaagcttttgggaagccttggtggcctcttctccaaaact 821
Query: 541 tggaagccgaagaagacacgtgcaataagaggccctgttatttttggagataatccagtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 tggaagccgaagaagacacgtgcaataagaggccctgttatttttggagataatccagtt 881
Query: 601 agcagacaggccaaccacttggaacagagagagaagttgggattgacttctgcacccaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 agcagacaggccaaccacttggaacagagagagaagttgggattgacttctgcacccaga 941
Query: 661 gggcaaactaagatgcgaaccccacctcacgaatcatcaactgcacttcaaaaagttgag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 gggcaaactaagatgcgaaccccacctcacgaatcatcaactgcacttcaaaaagttgag 1001
Query: 721 tttgaaaaagggaagcaagatgatgcactttcggatttaagtgatctgttgggagagctt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 tttgaaaaagggaagcaagatgatgcactttcggatttaagtgatctgttgggagagctt 1061
Query: 781 aaagacatggccattgacatgggatccgaaattgagaggcacaataaagctctgagccat 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 aaagacatggccattgacatgggatccgaaattgagaggcacaataaagctctgagccat 1121
Query: 841 ctagatgatgatgtggaagagttgaatttccgagtgaaaggtgctaatcaaagaggccgt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1122 ctagatgatgatgtggaagagttgaatttccgagtgaaaggtgctaatcaaagaggccgt 1181
Query: 901 cgtttgcttggaaaataa 918
||||||||||||||||||
Sbjct: 1182 cgtttgcttggaaaataa 1199
>gnl|LJGI|TC57215 weakly similar to UniRef100_Q10Q25 Cluster: SNARE domain containing
protein, expressed; n=1; Oryza sativa Japonica
Group|Rep: SNARE domain containing protein, expressed -
Oryza sativa subsp. japonica (Rice), partial (70%)
Length = 1341
Score = 281 bits (142), Expect = 4e-75
Identities = 399/484 (82%), Gaps = 3/484 (0%)
Strand = Plus / Plus
Query: 341 ctgaagagactacaaaatcagtcaacaattgtttgaagatagcagagaacataagagagg 400
|||||||||||||||| ||||| ||||| |||||||||||||| ||| | ||||||||||
Sbjct: 420 ctgaagagactacaaagtcagtaaacaactgtttgaagatagctgaggaaataagagagg 479
Query: 401 atgctaccaagactttagtcactcttcaccaacagggtgagcaaattaccaggagtcact 460
|||||||||| || ||||| | || || || || || ||||| ||||| |||||||||
Sbjct: 480 atgctaccaatacattagtgatgctgcatcagcaaggcgagcagattacaaggagtcacg 539
Query: 461 atgttgctgctgacattgatcatgacttaagtcggggagaaaagcttttgggaagccttg 520
||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 540 atgttgctgctgatattgatcatgatctaagtcggggagaaaagcttttgggaagtcttg 599
Query: 521 gtggcctcttctccaaaacttggaagccgaagaagacacgtgcaataagaggccctgtta 580
| ||| | ||||||| ||||||||| || ||||||||| | |||||| ||||||||||
Sbjct: 600 gaggcatgttctccagaacttggaaaccaaagaagacaggcacaataactggccctgtta 659
Query: 581 tttttggagataatccagttagcagacaggccaaccacttggaacagagagagaagttgg 640
||||||||| | ||||||| || ||| | | |||||||| ||| |||||||||||||| |
Sbjct: 660 tttttggagctgatccagtcagaagaaatggcaaccactcggagcagagagagaagttag 719
Query: 641 gattgacttct---gcacccagagggcaaactaagatgcgaaccccacctcacgaatcat 697
||||||||||| || || | |||||| | ||| ||| | ||| | || ||
Sbjct: 720 gattgacttcttcagctcctaaagggcagtcaaagccgcggaaatcactttctgagccaa 779
Query: 698 caactgcacttcaaaaagttgagtttgaaaaagggaagcaagatgatgcactttcggatt 757
||| |||| || ||||||||||| |||||||||||||||||||||||||| | || |||
Sbjct: 780 caaatgcatttgaaaaagttgaggttgaaaaagggaagcaagatgatgcattgtcagata 839
Query: 758 taagtgatctgttgggagagcttaaagacatggccattgacatgggatccgaaattgaga 817
| |||||||| || ||||| | || | ||||||||| ||||||||||| |||||||| |
Sbjct: 840 ttagtgatctcttaggagaattgaagggcatggccatggacatgggatctgaaattgaca 899
Query: 818 ggca 821
||||
Sbjct: 900 ggca 903
>gnl|LJGI|TC65767 similar to UniRef100_A7P2H5 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (44%)
Length = 816
Score = 228 bits (115), Expect = 5e-59
Identities = 223/259 (86%)
Strand = Plus / Plus
Query: 341 ctgaagagactacaaaatcagtcaacaattgtttgaagatagcagagaacataagagagg 400
|||||||||||||||| ||||| ||||| |||||||||||||| ||| | ||||||||||
Sbjct: 557 ctgaagagactacaaagtcagtaaacaactgtttgaagatagctgaggaaataagagagg 616
Query: 401 atgctaccaagactttagtcactcttcaccaacagggtgagcaaattaccaggagtcact 460
|||||||||| || ||||| | || || || || || ||||| ||||| |||||||||
Sbjct: 617 atgctaccaatacattagtgatgctgcatcagcaaggcgagcagattacaaggagtcacg 676
Query: 461 atgttgctgctgacattgatcatgacttaagtcggggagaaaagcttttgggaagccttg 520
||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 677 atgttgctgctgatattgatcatgatctaagtcggggagaaaagcttttgggaagtcttg 736
Query: 521 gtggcctcttctccaaaacttggaagccgaagaagacacgtgcaataagaggccctgtta 580
| ||| | ||||||| ||||||||| || ||||||||| | |||||| ||||||||||
Sbjct: 737 gaggcatgttctccagaacttggaaaccaaagaagacaggcacaataactggccctgtta 796
Query: 581 tttttggagataatccagt 599
||||||||| | |||||||
Sbjct: 797 tttttggagctgatccagt 815
>gnl|LJGI|TC78644 similar to UniRef100_Q10Q25 Cluster: SNARE domain containing
protein, expressed; n=1; Oryza sativa Japonica
Group|Rep: SNARE domain containing protein, expressed -
Oryza sativa subsp. japonica (Rice), partial (27%)
Length = 776
Score = 202 bits (102), Expect = 3e-51
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 817 aggcacaataaagctctgagccatctagatgatgatgtggaagagttgaatttccgagtg 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aggcacaataaagctctgagccatctagatgatgatgtggaagagttgaatttccgagtg 608
Query: 877 aaaggtgctaatcaaagaggccgtcgtttgcttggaaaataa 918
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aaaggtgctaatcaaagaggccgtcgtttgcttggaaaataa 650
Score = 200 bits (101), Expect = 1e-50
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 719 agtttgaaaaagggaagcaagatgatgcactttcggatttaagtgatctgttgggagagc 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 agtttgaaaaagggaagcaagatgatgcactttcggatttaagtgatctgttgggagagc 150
Query: 779 ttaaagacatggccattgacatgggatccgaaattgagagg 819
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ttaaagacatggccattgacatgggatccgaaattgagagg 191
>gnl|LJGI|FS358773 similar to UniRef100_Q8CDN8 Cluster: Coiled-coil domain-containing
protein 38; n=1; Mus musculus|Rep: Coiled-coil
domain-containing protein 38 - Mus musculus (Mouse),
partial (4%)
Length = 250
Score = 79.8 bits (40), Expect = 3e-14
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 719 agtttgaaaaagggaagcaagatgatgcactttcggattt 758
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 agtttgaaaaagggaagcaagatgatgcactttcggattt 1