Miyakogusa Predicted Gene
- Lj4g3v1683090.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v1683090.1 tr|G7JGQ4|G7JGQ4_MEDTR Eukaryotic translation
initiation factor 5A-1 OS=Medicago truncatula
GN=MTR_4,43.75,5e-16,eIF-5a,Translation elongation factor, IF5A
C-terminal; TRANSLATION INITIATION FACTOR 5A-RELATED,Tran,CUFF.49625.1
(483 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67187 homologue to UniRef100_A6YGE9 Cluster: Translat... 957 0.0
gnl|LJGI|TC60723 homologue to UniRef100_A6YGE9 Cluster: Translat... 957 0.0
gnl|LJGI|BW598541 similar to UniRef100_A6YGE9 Cluster: Translati... 504 e-142
gnl|LJGI|TC60132 homologue to UniRef100_Q71F50 Cluster: Eukaryot... 432 e-121
gnl|LJGI|TC57704 homologue to UniRef100_Q945F4 Cluster: Eukaryot... 341 2e-93
gnl|LJGI|AU088753 similar to UniRef100_Q945F4 Cluster: Eukaryoti... 309 9e-84
gnl|LJGI|BP057255 homologue to UniRef100_Q945F4 Cluster: Eukaryo... 210 6e-54
gnl|LJGI|TC67467 homologue to UniRef100_Q945F4 Cluster: Eukaryot... 182 1e-45
>gnl|LJGI|TC67187 homologue to UniRef100_A6YGE9 Cluster: Translation initiation
factor; n=1; Carica papaya|Rep: Translation initiation
factor - Carica papaya (Papaya), complete
Length = 777
Score = 957 bits (483), Expect = 0.0
Identities = 483/483 (100%)
Strand = Plus / Plus
Query: 1 atgtctgacgaggagcaccatttcgagtccaaggccgacgccggagcctccaaaacctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 atgtctgacgaggagcaccatttcgagtccaaggccgacgccggagcctccaaaacctac 145
Query: 61 cctcaacaagccggtaccatccgcaaaaacggctacatcaacatcaagaaccgcccctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 cctcaacaagccggtaccatccgcaaaaacggctacatcaacatcaagaaccgcccctgc 205
Query: 121 aaggttgttgaagtttccacttccaagactgggaagcacggtcatgctaagtgccacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aaggttgttgaagtttccacttccaagactgggaagcacggtcatgctaagtgccacttt 265
Query: 181 gttggaattgatatcttcactggcaagaagcttgaggatattgttccttcttctcataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gttggaattgatatcttcactggcaagaagcttgaggatattgttccttcttctcataat 325
Query: 241 tgtgatgttcctcatgtgactcgtactgattaccagctcattgatatttctgaggatgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgtgatgttcctcatgtgactcgtactgattaccagctcattgatatttctgaggatgga 385
Query: 301 tttgtgagtcttcttactgaaagtggtggtaccaaggatgatctcaagcttcctactgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttgtgagtcttcttactgaaagtggtggtaccaaggatgatctcaagcttcctactgat 445
Query: 361 gatgctctcctcactcagattaaggagggatttgctgagggaaaagatcttgttgtttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gatgctctcctcactcagattaaggagggatttgctgagggaaaagatcttgttgtttct 505
Query: 421 gtcatgtctgctatgggtgaggaacagattaatgccctcaaggatattggaccgaagaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtcatgtctgctatgggtgaggaacagattaatgccctcaaggatattggaccgaagaac 565
Query: 481 tag 483
|||
Sbjct: 566 tag 568
>gnl|LJGI|TC60723 homologue to UniRef100_A6YGE9 Cluster: Translation initiation
factor; n=1; Carica papaya|Rep: Translation initiation
factor - Carica papaya (Papaya), complete
Length = 818
Score = 957 bits (483), Expect = 0.0
Identities = 483/483 (100%)
Strand = Plus / Plus
Query: 1 atgtctgacgaggagcaccatttcgagtccaaggccgacgccggagcctccaaaacctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 atgtctgacgaggagcaccatttcgagtccaaggccgacgccggagcctccaaaacctac 149
Query: 61 cctcaacaagccggtaccatccgcaaaaacggctacatcaacatcaagaaccgcccctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 cctcaacaagccggtaccatccgcaaaaacggctacatcaacatcaagaaccgcccctgc 209
Query: 121 aaggttgttgaagtttccacttccaagactgggaagcacggtcatgctaagtgccacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aaggttgttgaagtttccacttccaagactgggaagcacggtcatgctaagtgccacttt 269
Query: 181 gttggaattgatatcttcactggcaagaagcttgaggatattgttccttcttctcataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gttggaattgatatcttcactggcaagaagcttgaggatattgttccttcttctcataat 329
Query: 241 tgtgatgttcctcatgtgactcgtactgattaccagctcattgatatttctgaggatgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgtgatgttcctcatgtgactcgtactgattaccagctcattgatatttctgaggatgga 389
Query: 301 tttgtgagtcttcttactgaaagtggtggtaccaaggatgatctcaagcttcctactgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tttgtgagtcttcttactgaaagtggtggtaccaaggatgatctcaagcttcctactgat 449
Query: 361 gatgctctcctcactcagattaaggagggatttgctgagggaaaagatcttgttgtttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gatgctctcctcactcagattaaggagggatttgctgagggaaaagatcttgttgtttct 509
Query: 421 gtcatgtctgctatgggtgaggaacagattaatgccctcaaggatattggaccgaagaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gtcatgtctgctatgggtgaggaacagattaatgccctcaaggatattggaccgaagaac 569
Query: 481 tag 483
|||
Sbjct: 570 tag 572
>gnl|LJGI|BW598541 similar to UniRef100_A6YGE9 Cluster: Translation initiation factor;
n=1; Carica papaya|Rep: Translation initiation factor -
Carica papaya (Papaya), partial (72%)
Length = 499
Score = 504 bits (254), Expect = e-142
Identities = 404/438 (92%), Gaps = 12/438 (2%)
Strand = Plus / Plus
Query: 1 atgtctgacgaggagcaccatttcgagtccaaggccgacgccggagcctccaaaacctac 60
|||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||
Sbjct: 62 atgtctgacgaggagcaccatttctagtccaaggccgacgccagaaccaccaaaacctac 121
Query: 61 cctcaacaag-ccggtacca-tccgc-aaaaacgg-cta-catcaac-atcaag-aac-c 112
|||| ||||| ||||||||| ||||| |||||||| ||| ||||||| ||||| ||| |
Sbjct: 122 cctctacaaggccggtaccagtccgcgaaaaacggnctaacatcaacgatcaattaacac 181
Query: 113 gcccctgcaaggt-tgttga-agtttccac-ttccaagactggg-aagcacggtcatgct 168
||||||| |||| |||||| ||||||||| |||| ||||||| |||||||||||||||
Sbjct: 182 tcccctgctaggtatgttgacagtttccacgttcccagactggctaagcacggtcatgct 241
Query: 169 aagtgccactttgttggaattgatatcttcactggcaagaagcttgaggatattgttcct 228
|| ||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||
Sbjct: 242 aactgccactttgttggaattgatatcttcactggcgacaatcttgacgatattgttcct 301
Query: 229 tcttctcataattgtgatgttcctcatgtgactcgtactgattaccagctcattgatatt 288
||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct: 302 tcttctcataattgtgatgttcctcatgtgactcgaactgattacaatctcattgatatt 361
Query: 289 tctgaggatggatttgtgagtcttcttactgaaagtggtggtaccaaggatgatctcaag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tctgaggatggatttgtgagtcttcttactgaaagtggtggtaccaaggatgatctcaag 421
Query: 349 cttcctactgatgatgctctcctcactcagattaaggagggatttgctgagggaaaagat 408
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||
Sbjct: 422 cttcctactgatgatgctctcctcactcatattaaggacggatttgctgatggaaaacat 481
Query: 409 cttgttgtttctgtcatg 426
||||||||||||||||||
Sbjct: 482 cttgttgtttctgtcatg 499
>gnl|LJGI|TC60132 homologue to UniRef100_Q71F50 Cluster: Eukaryotic translation
initiation factor 5A isoform II; n=1; Hevea
brasiliensis|Rep: Eukaryotic translation initiation
factor 5A isoform II - Hevea brasiliensis (Para rubber
tree), complete
Length = 739
Score = 432 bits (218), Expect = e-121
Identities = 407/470 (86%)
Strand = Plus / Plus
Query: 1 atgtctgacgaggagcaccatttcgagtccaaggccgacgccggagcctccaaaacctac 60
||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 83 atgtcggacgaggagcaccacttcgagtcaaaggccgacgccggagcctccaagacctat 142
Query: 61 cctcaacaagccggtaccatccgcaaaaacggctacatcaacatcaagaaccgcccctgc 120
||||| |||||||| ||||||||||||| ||| |||||| ||||||| || ||||||
Sbjct: 143 cctcagcaagccggcaccatccgcaaaagcggttacatcgtcatcaagggtcgtccctgc 202
Query: 121 aaggttgttgaagtttccacttccaagactgggaagcacggtcatgctaagtgccacttt 180
||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 203 aaggttgttgaggtttcaacctccaagactggtaagcatggtcatgctaagtgccacttt 262
Query: 181 gttggaattgatatcttcactggcaagaagcttgaggatattgttccttcttctcataat 240
|||| ||||||||| ||||||| ||| |||||||||||||||||||| ||||| || |||
Sbjct: 263 gttgcaattgatattttcactgccaaaaagcttgaggatattgttccctcttcccacaat 322
Query: 241 tgtgatgttcctcatgtgactcgtactgattaccagctcattgatatttctgaggatgga 300
||||||||||||||||||| ||||||||| |||||| | ||||||||| |||||||||||
Sbjct: 323 tgtgatgttcctcatgtgaatcgtactgactaccagttgattgatattgctgaggatgga 382
Query: 301 tttgtgagtcttcttactgaaagtggtggtaccaaggatgatctcaagcttcctactgat 360
||| |||| || |||||||||| ||| ||||||||||| |||||||| |||||||||
Sbjct: 383 tttctgagcctgcttactgaaaatgggaacaccaaggatgacctcaagctccctactgat 442
Query: 361 gatgctctcctcactcagattaaggagggatttgctgagggaaaagatcttgttgtttct 420
|| ||||| || ||||||| ||||| || ||||||||||| || || |||||| |
Sbjct: 443 gaggctctactttctcagataaaggatgggtttgctgagggtaaggaccttgttttgagc 502
Query: 421 gtcatgtctgctatgggtgaggaacagattaatgccctcaaggatattgg 470
|| |||||||| ||||||||||| |||||| |||||| |||||||||||
Sbjct: 503 gttatgtctgcaatgggtgaggagcagatttgtgccctgaaggatattgg 552
>gnl|LJGI|TC57704 homologue to UniRef100_Q945F4 Cluster: Eukaryotic translation
initiation factor 5A-2; n=1; Medicago sativa|Rep:
Eukaryotic translation initiation factor 5A-2 - Medicago
sativa (Alfalfa), complete
Length = 827
Score = 341 bits (172), Expect = 2e-93
Identities = 391/464 (84%)
Strand = Plus / Plus
Query: 1 atgtctgacgaggagcaccatttcgagtccaaggccgacgccggagcctccaaaacctac 60
||||||||||| |||||||| |||||||||||||| |||||||| || ||||| |||||
Sbjct: 44 atgtctgacgaagagcaccacttcgagtccaaggctgacgccggcgcatccaagacctat 103
Query: 61 cctcaacaagccggtaccatccgcaaaaacggctacatcaacatcaagaaccgcccctgc 120
|| || |||||||| ||| ||||||| ||||| ||||| |||||||||| | ||||||
Sbjct: 104 ccgcagcaagccggaaccgtccgcaagaacggttacattgtcatcaagaacaggccctgc 163
Query: 121 aaggttgttgaagtttccacttccaagactgggaagcacggtcatgctaagtgccacttt 180
||||||||||| ||||| |||||||| ||||| ||||| || ||||| ||||| ||||||
Sbjct: 164 aaggttgttgaggtttctacttccaaaactggcaagcatggacatgcgaagtgtcacttt 223
Query: 181 gttggaattgatatcttcactggcaagaagcttgaggatattgttccttcttctcataat 240
|||| ||||| |||||||| ||||| ||||||||||||||||| || ||||| |||||
Sbjct: 224 gttgctattgacatcttcaccggcaaaaagcttgaggatattgtcccatcttcccataac 283
Query: 241 tgtgatgttcctcatgtgactcgtactgattaccagctcattgatatttctgaggatgga 300
|||||| | |||||||| | |||||||||||||||||| |||||||| || |||||||||
Sbjct: 284 tgtgatatccctcatgtcaatcgtactgattaccagcttattgatatctcagaggatgga 343
Query: 301 tttgtgagtcttcttactgaaagtggtggtaccaaggatgatctcaagcttcctactgat 360
||||||||||| || ||||| ||||| ||| |||||||| || ||||||||||| |||
Sbjct: 344 tttgtgagtctgctgactgactctggtgatactaaggatgaccttaagcttcctaccgat 403
Query: 361 gatgctctcctcactcagattaaggagggatttgctgagggaaaagatcttgttgtttct 420
|||||||| || | ||||| |||||||| |||| ||| || || ||||| ||||| |
Sbjct: 404 gatgctctgcttaagcagatcaaggagggctttggtgatggtaaggatctggttgtgagt 463
Query: 421 gtcatgtctgctatgggtgaggaacagattaatgccctcaagga 464
|| |||||||| ||||| ||||| |||||| |||||| |||||
Sbjct: 464 gttatgtctgccatgggggaggagcagatttgtgcccttaagga 507
>gnl|LJGI|AU088753 similar to UniRef100_Q945F4 Cluster: Eukaryotic translation
initiation factor 5A-2; n=1; Medicago sativa|Rep:
Eukaryotic translation initiation factor 5A-2 - Medicago
sativa (Alfalfa), complete
Length = 717
Score = 309 bits (156), Expect = 9e-84
Identities = 386/464 (83%)
Strand = Plus / Plus
Query: 1 atgtctgacgaggagcaccatttcgagtccaaggccgacgccggagcctccaaaacctac 60
||||||||||| ||||||| |||||||||||||| |||||||| || ||||| |||||
Sbjct: 23 atgtctgacgaanagcaccacttcgagtccaaggctgacgccggcgcatccaagacctat 82
Query: 61 cctcaacaagccggtaccatccgcaaaaacggctacatcaacatcaagaaccgcccctgc 120
|| || |||||||| ||| ||||||| ||||| ||||| |||||||||| | ||||||
Sbjct: 83 ccgcagcaagccggaaccgtccgcaagaacggttacattgtcatcaagaacaggccctgc 142
Query: 121 aaggttgttgaagtttccacttccaagactgggaagcacggtcatgctaagtgccacttt 180
||||||||||| ||||| |||||||| ||||| ||||| || ||||| ||||| ||||||
Sbjct: 143 aaggttgttgaggtttctacttccaaaactggcaagcatggacatgcgaagtgtcacttt 202
Query: 181 gttggaattgatatcttcactggcaagaagcttgaggatattgttccttcttctcataat 240
|||| ||||| |||||||| ||||| ||||||||||||||||| || ||||| |||||
Sbjct: 203 gttgctattgacatcttcaccggcaaaaagcttgaggatattgtcccatcttcccataac 262
Query: 241 tgtgatgttcctcatgtgactcgtactgattaccagctcattgatatttctgaggatgga 300
|||||| | |||||||| | |||||||||||||||||| |||||||| || ||||||||
Sbjct: 263 tgtgatatccctcatgtcaatcgtactgattaccagcttattgatatctcanaggatgga 322
Query: 301 tttgtgagtcttcttactgaaagtggtggtaccaaggatgatctcaagcttcctactgat 360
||||||||||| || ||||| ||||| ||| |||||||| || ||||||||||| |||
Sbjct: 323 tttgtgagtctgctgactgactctggtgatactaaggatgaccttaagcttcctaccgat 382
Query: 361 gatgctctcctcactcagattaaggagggatttgctgagggaaaagatcttgttgtttct 420
|||||||| || | ||||| ||||| || |||| ||| || || ||||| ||||| |
Sbjct: 383 gatgctctgcttaagcagatcaaggaaggctttggtgatggtaaggatctggttgtgagt 442
Query: 421 gtcatgtctgctatgggtgaggaacagattaatgccctcaagga 464
|| |||||||| ||||| || || || ||| |||||| |||||
Sbjct: 443 gttatgtctgccatgggggaagancanatttgtgcccttaagga 486
>gnl|LJGI|BP057255 homologue to UniRef100_Q945F4 Cluster: Eukaryotic translation
initiation factor 5A-2; n=1; Medicago sativa|Rep:
Eukaryotic translation initiation factor 5A-2 - Medicago
sativa (Alfalfa), partial (80%)
Length = 509
Score = 210 bits (106), Expect = 6e-54
Identities = 266/320 (83%)
Strand = Plus / Minus
Query: 118 tgcaaggttgttgaagtttccacttccaagactgggaagcacggtcatgctaagtgccac 177
||||||||||||||||||||||| || || || || ||||| || ||||| |||||||||
Sbjct: 487 tgcaaggttgttgaagtttccacatcaaaaacaggcaagcatggacatgcaaagtgccac 428
Query: 178 tttgttggaattgatatcttcactggcaagaagcttgaggatattgttccttcttctcat 237
||||| | |||||| | |||| ||| | |||||||| |||||||||||||| || ||
Sbjct: 427 tttgtcgccattgatgttttcaatgggagaaagcttgaagatattgttccttcatcccac 368
Query: 238 aattgtgatgttcctcatgtgactcgtactgattaccagctcattgatatttctgaggat 297
|| ||||||||||| || |||| ||| |||||||| ||||| |||||||| ||||| |||
Sbjct: 367 aactgtgatgttccacacgtgaatcgcactgattatcagctgattgatatctctgaagat 308
Query: 298 ggatttgtgagtcttcttactgaaagtggtggtaccaaggatgatctcaagcttcctact 357
|| ||||||||||| | ||||| ||| ||||||||||||||||| |||||||| |||
Sbjct: 307 ggttttgtgagtctgttgactgacnatggaggtaccaaggatgatctgaagcttcccact 248
Query: 358 gatgatgctctcctcactcagattaaggagggatttgctgagggaaaagatcttgttgtt 417
||||| | || || |||||||||| || |||||| ||| || ||||||||||| |||
Sbjct: 247 gatgagacactgcttgctcagattaaagatggatttaatgaagggaaagatcttgtggtt 188
Query: 418 tctgtcatgtctgctatggg 437
|||||||||||||| |||||
Sbjct: 187 tctgtcatgtctgcnatggg 168
>gnl|LJGI|TC67467 homologue to UniRef100_Q945F4 Cluster: Eukaryotic translation
initiation factor 5A-2; n=1; Medicago sativa|Rep:
Eukaryotic translation initiation factor 5A-2 - Medicago
sativa (Alfalfa), partial (81%)
Length = 691
Score = 182 bits (92), Expect = 1e-45
Identities = 185/216 (85%)
Strand = Plus / Plus
Query: 1 atgtctgacgaggagcaccatttcgagtccaaggccgacgccggagcctccaaaacctac 60
||||||||||| |||||||| |||||||||||||| |||||||| || ||||| |||||
Sbjct: 19 atgtctgacgaagagcaccacttcgagtccaaggctgacgccggcgcatccaagacctat 78
Query: 61 cctcaacaagccggtaccatccgcaaaaacggctacatcaacatcaagaaccgcccctgc 120
|| || |||||||| ||| ||||||| ||||| ||||| |||||||||| | ||||||
Sbjct: 79 ccgcagcaagccggaaccgtccgcaagaacggttacattgtcatcaagaacaggccctgc 138
Query: 121 aaggttgttgaagtttccacttccaagactgggaagcacggtcatgctaagtgccacttt 180
||||||||||| ||||| |||||||| ||||| ||||| || ||||| ||||| ||||||
Sbjct: 139 aaggttgttgaggtttctacttccaaaactggcaagcatggacatgcgaagtgtcacttt 198
Query: 181 gttggaattgatatcttcactggcaagaagcttgag 216
|||| ||||| |||||||| ||||| |||||||||
Sbjct: 199 gttgctattgacatcttcaccggcaaaaagcttgag 234
Score = 73.8 bits (37), Expect = 9e-13
Identities = 115/141 (81%)
Strand = Plus / Plus
Query: 324 tggtggtaccaaggatgatctcaagcttcctactgatgatgctctcctcactcagattaa 383
||||| ||| |||||||| || ||||||||||| ||||||||||| || | ||||| ||
Sbjct: 250 tggtgatactaaggatgaccttaagcttcctaccgatgatgctctgcttaagcagatcaa 309
Query: 384 ggagggatttgctgagggaaaagatcttgttgtttctgtcatgtctgctatgggtgagga 443
|||||| |||| ||| || || ||||| ||||| ||| |||||||| ||||| |||||
Sbjct: 310 ggagggctttggtgatggtaaggatctggttgtgagtgttatgtctgccatgggggagga 369
Query: 444 acagattaatgccctcaagga 464
|||||| |||||| |||||
Sbjct: 370 gcagatttgtgcccttaagga 390