Miyakogusa Predicted Gene

Lj4g3v1659940.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1659940.1 Non Chatacterized Hit- tr|B6SKC3|B6SKC3_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,37.39,1e-17,seg,NULL,CUFF.49559.1
         (670 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC68486 weakly similar to UniRef100_A7PDI1 Cluster: Chr...    72   5e-12

>gnl|LJGI|TC68486 weakly similar to UniRef100_A7PDI1 Cluster: Chromosome chr17
           scaffold_12, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr17 scaffold_12, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (69%)
          Length = 1299

 Score = 71.9 bits (36), Expect = 5e-12
 Identities = 110/136 (80%), Gaps = 9/136 (6%)
 Strand = Plus / Plus

                                                                       
Query: 181 attctgtttgatgctgcaggttttccttcctcttcacaattgttcaccattctcaacctc 240
           ||||| |||||||||||||| ||||| ||||| ||||||||||| |||         | |
Sbjct: 180 attctctttgatgctgcaggctttccctcctcatcacaattgtttacc---------cgc 230

                                                                       
Query: 241 aaggtttcacaaacactcagctcttcaattttcacccttcctttcaccctcacctttctc 300
           |||||||| |||||| |||  || ||||| |||||||||||  |||||||||||||| ||
Sbjct: 231 aaggtttctcaaacaatcacttcctcaatcttcacccttccactcaccctcacctttttc 290

                           
Query: 301 ctttttgcaaaagcat 316
           ||  ||||||||||||
Sbjct: 291 ctcattgcaaaagcat 306



 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                          
Query: 9  ttcatgcaagattctgaggagatcaatccacagttttcttcaaaacta 56
          |||| |||||| ||| || |||||||||||| ||||||||||||||||
Sbjct: 11 ttcaggcaagactctcagaagatcaatccactgttttcttcaaaacta 58