Miyakogusa Predicted Gene

Lj4g3v1561700.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1561700.1 Non Chatacterized Hit- tr|B9FSH6|B9FSH6_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,38.89,0.0000004,"Winged helix" DNA-binding domain,NULL;
E2F_TDP,Transcription factor E2F/dimerisation partner
(TDP);,CUFF.49420.1
         (1152 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|GO012178 similar to UniRef100_A7PD78 Cluster: Chromosom...   141   1e-32

>gnl|LJGI|GO012178 similar to UniRef100_A7PD78 Cluster: Chromosome chr17 scaffold_12,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_12, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (41%)
          Length = 635

 Score =  141 bits (71), Expect = 1e-32
 Identities = 179/215 (83%)
 Strand = Plus / Plus

                                                                       
Query: 49  caccacacctacaatcgcaagcaaaaatccctcggcctcttatgcaccaatttcttgagc 108
           ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 6   caccacacctacaatcgaaagcaaaaatctctcggtctcttatgcaccaatttcttgagc 65

                                                                       
Query: 109 ttgtacaatcgagacaatatccacttgatcggtctcgacgacgccgcttccagattaggg 168
           ||||||||   |||   ||||||| | || || |||||||| |||   ||  ||||||||
Sbjct: 66  ttgtacaacaaagaaggtatccacctaattggcctcgacgatgcctgctcacgattaggg 125

                                                                       
Query: 169 gttgagagaagacggatctacgatatagtcaacgttttggagagcattggagttctctca 228
           || |||||  | |||||||| ||||| |||||||| ||||||||  ||||  | ||  | 
Sbjct: 126 gtcgagaggcgtcggatctatgatatcgtcaacgtcttggagagtgttgggatgcttgcg 185

                                              
Query: 229 agaaaagccaagaatcaatacacctggaaaggctt 263
           |||||||| ||||||||||| ||||||||||||||
Sbjct: 186 agaaaagctaagaatcaatatacctggaaaggctt 220



 Score = 75.8 bits (38), Expect = 5e-13
 Identities = 172/216 (79%), Gaps = 3/216 (1%)
 Strand = Plus / Plus

                                                                       
Query: 455 aaaatgataaccgaagggaaaagtctctggccctgctcactcagaattttgtgaagctct 514
           ||||||| ||| ||| ||||||||||||  | ||||| |||||||||||||| |||||||
Sbjct: 403 aaaatgaaaacagaaaggaaaagtctctaacactgcttactcagaattttgtcaagctct 462

                                                                       
Query: 515 tcctctgctccaacgtggaaatgatctcccttgatgatgcggcgaaattgcttcttgggg 574
           |  ||||||| ||  |  ||||| |||||||||| ||||| || || ||| | |||||  
Sbjct: 463 ttgtctgctctaatattcaaatggtctcccttgacgatgctgcaaagttgttgcttggaa 522

                                                                       
Query: 575 atgcccataatacatcaataatgagaacgaaagttaggcgcctatatgatattgcaaatg 634
           |||    | ||||  | || |||||||| ||||| || ||||| ||||||||||||||||
Sbjct: 523 atg---ttgatactgctatgatgagaacaaaagtcagacgcctgtatgatattgcaaatg 579

                                               
Query: 635 tgctatcttccatgagccttattgagaagacacata 670
           ||||||| || || | ||| ||||| ||||| ||||
Sbjct: 580 tgctatcctctatcaacctaattgaaaagacccata 615