Miyakogusa Predicted Gene
- Lj4g3v1535130.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v1535130.1 tr|G7JNT9|G7JNT9_MEDTR RING finger protein
OS=Medicago truncatula GN=MTR_4g106680 PE=4
SV=1,61.52,0,RING/U-box,NULL; Ring finger,Zinc finger, RING-type;
seg,NULL; no description,Zinc finger, RING/FYVE,CUFF.49360.1
(993 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO026219 weakly similar to UniRef100_Q8GW38 Cluster: RI... 688 0.0
gnl|LJGI|TC63161 similar to UniRef100_A7PD41 Cluster: Chromosome... 74 2e-12
gnl|LJGI|TC66485 similar to UniRef100_A7Q2K7 Cluster: Chromosome... 54 2e-06
>gnl|LJGI|GO026219 weakly similar to UniRef100_Q8GW38 Cluster: RING-H2 finger protein
ATL1D; n=1; Arabidopsis thaliana|Rep: RING-H2 finger
protein ATL1D - Arabidopsis thaliana (Mouse-ear cress),
partial (11%)
Length = 607
Score = 688 bits (347), Expect = 0.0
Identities = 350/351 (99%)
Strand = Plus / Plus
Query: 1 atgcgcagcataccacttgatttgaagcactcatcatcatctcagcctcctttctctgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atgcgcagcataccacttgatttgaagcactcatcatcatctcagcctcctttctctgca 316
Query: 61 tttcaaacatttcatgaagctaatgttagcaatgagaatgaagcatcaccatcaccacca 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 317 tttcaaacatttcatgaagctaatgttagcaatgggaatgaagcatcaccatcaccacca 376
Query: 121 tcatcatcatcgtcgtctcttattggaattagtccacttattttgctggttataacagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tcatcatcatcgtcgtctcttattggaattagtccacttattttgctggttataacagtt 436
Query: 181 ctctcagttatctttttcatctatggccttatccatttggttctgtggtttctgatgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctctcagttatctttttcatctatggccttatccatttggttctgtggtttctgatgaaa 496
Query: 241 agaccatcatcatcctcttcaatcctctacaattccaacagattccaagagtccaccacg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agaccatcatcatcctcttcaatcctctacaattccaacagattccaagagtccaccacg 556
Query: 301 agaacccgcgctcttcaaagacagcttcaaaacctcttccgcttgcatgac 351
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agaacccgcgctcttcaaagacagcttcaaaacctcttccgcttgcatgac 607
>gnl|LJGI|TC63161 similar to UniRef100_A7PD41 Cluster: Chromosome chr17 scaffold_12,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_12, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (60%)
Length = 1033
Score = 73.8 bits (37), Expect = 2e-12
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 414 cttgaaggaaccctttgattgtgctgtgtgtctctttgaattctcagagcacgacaagct 473
|||||| || || ||||||||||| || || |||| ||| |||| || || ||||||||
Sbjct: 321 cttgaaagagccatttgattgtgcagtttgcctctgtgagttcttggaacaggacaagct 380
Query: 474 gagattgcttccaatgtgcagccatgcctttcacatggattgccttgacacatggcttct 533
||||||||| ||| | |||| |||||| |||||||| || ||| | ||||||||| | ||
Sbjct: 381 gagattgctcccagtctgcaaccatgcttttcacatagactgcatagacacatggttact 440
Query: 534 ctcaaactctacatgtcctctatgcagag 562
|| || || || ||||||||||||||||
Sbjct: 441 gtccaattcaacttgtcctctatgcagag 469
>gnl|LJGI|TC66485 similar to UniRef100_A7Q2K7 Cluster: Chromosome chr1 scaffold_46,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_46, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (53%)
Length = 1008
Score = 54.0 bits (27), Expect = 2e-06
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 104 catcaccatcaccaccatcatcatcat 130
|||||||||||||||||||||||||||
Sbjct: 680 catcaccatcaccaccatcatcatcat 654