Miyakogusa Predicted Gene

Lj4g3v1478260.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1478260.1 Non Chatacterized Hit- tr|K4B7V5|K4B7V5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,52.63,0.000000000000005,A_tha_TIGR01569: plant integral
membrane protein T,Uncharacterised protein family UPF0497,
trans-mem,CUFF.49301.1
         (231 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|GO036682 weakly similar to UniRef100_Q9FI10 Cluster: UP...   373   e-103
gnl|LJGI|DC594153 weakly similar to UniRef100_A7QC16 Cluster: Ch...   143   5e-34

>gnl|LJGI|GO036682 weakly similar to UniRef100_Q9FI10 Cluster: UPF0497 membrane
           protein At5g44550; n=1; Arabidopsis thaliana|Rep:
           UPF0497 membrane protein At5g44550 - Arabidopsis
           thaliana (Mouse-ear cress), partial (46%)
          Length = 716

 Score =  373 bits (188), Expect = e-103
 Identities = 222/232 (95%), Gaps = 1/232 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtggtcatagcattggatgtttt-aggaccccggtctgataaccaaggactttatct 59
           |||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct: 326 atggtggtcatagcgttggatttttttaggaccccggtttgataaccaaggactttatct 385

                                                                       
Query: 60  tacactgattgcaatatttgacatgatgattatggctcttgcatcagccggggatggtgc 119
           |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 386 tacactgattgcaatatttgacatgatgatcatggctcttgtatcagccggggatggtgc 445

                                                                       
Query: 120 agcagcattcatgtcagaattggggaggaatggtaattcacatgcaaggtgggccaagat 179
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 446 agcagcattcatgtcagaattgggaaggaatggtaattcacatgcaaggtgggccaagat 505

                                                               
Query: 180 atgtcacaaatttggaacctactgcaacagaggtggtggtgcccttattgcc 231
           |||| ||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 506 atgtgacagatttggaacctactgcaacagaggtggtggtgccctaattgcc 557


>gnl|LJGI|DC594153 weakly similar to UniRef100_A7QC16 Cluster: Chromosome chr10
           scaffold_76, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr10 scaffold_76, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (37%)
          Length = 587

 Score =  143 bits (72), Expect = 5e-34
 Identities = 81/84 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtggtcatagcattggatgttttaggaccccggtctgataaccaaggactttatctt 60
           |||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 293 atggtggtcatagcgttggattttttaggaccccggtttgataaccaaggactttatctt 352

                                   
Query: 61  acactgattgcaatatttgacatg 84
           ||||||||||||||||||||||||
Sbjct: 353 acactgattgcaatatttgacatg 376