Miyakogusa Predicted Gene
- Lj4g3v1411040.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v1411040.1 tr|A6N0D0|A6N0D0_ORYSI Chloroplast 28 kDa
ribonucleoprotein (Fragment) OS=Oryza sativa subsp.
indica,49.44,0.000000000000001,RNA-binding domain, RBD,NULL; seg,NULL;
RNA recognition motif,RNA recognition motif domain;
RRM_1,RN,CUFF.49212.1
(924 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58995 similar to UniRef100_A7PLZ2 Cluster: Chromosome... 1832 0.0
gnl|LJGI|AV773202 similar to UniRef100_P28644 Cluster: 28 kDa ri... 313 1e-84
gnl|LJGI|TC62706 similar to UniRef100_A7PLZ2 Cluster: Chromosome... 96 5e-19
>gnl|LJGI|TC58995 similar to UniRef100_A7PLZ2 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (67%)
Length = 1409
Score = 1832 bits (924), Expect = 0.0
Identities = 924/924 (100%)
Strand = Plus / Plus
Query: 1 atgtctatcacaaccatgcctgcgttcaagttcctcacagtggcagaatcatgcctactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 atgtctatcacaaccatgcctgcgttcaagttcctcacagtggcagaatcatgcctactc 169
Query: 61 tctcaaccctcactcttctcctccaaaaccagatacccaattctctcaaattctctaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tctcaaccctcactcttctcctccaaaaccagatacccaattctctcaaattctctaaag 229
Query: 121 accctcaagcttcaactcccatgctcaaattcttcacctttttcaccctccctcctctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 accctcaagcttcaactcccatgctcaaattcttcacctttttcaccctccctcctctca 289
Query: 181 acaacccaccgttctcctctcctcacatttgtagcccagacttcagattgggctcagcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 acaacccaccgttctcctctcctcacatttgtagcccagacttcagattgggctcagcaa 349
Query: 241 gaagaagagggtggagccgcatgggagaacgagggcgaacccacatgggcaaatgaagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gaagaagagggtggagccgcatgggagaacgagggcgaacccacatgggcaaatgaagat 409
Query: 301 agtgatgaaactgaaggtggtgaagaagtggtggcatctgctgaaccttctgaagatttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agtgatgaaactgaaggtggtgaagaagtggtggcatctgctgaaccttctgaagatttg 469
Query: 361 aagatctttgttgggaacttgccatgggatgttgagagtgagaatttggccatgcttttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aagatctttgttgggaacttgccatgggatgttgagagtgagaatttggccatgcttttt 529
Query: 421 gaggaagctgggtcggtggagtttgctgaggttatttataataaggccactaaccaaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gaggaagctgggtcggtggagtttgctgaggttatttataataaggccactaaccaaagt 589
Query: 481 cgtgggtttggatttgttatcatgagtacggctgaagatcttgagaaggctttgaacaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 cgtgggtttggatttgttatcatgagtacggctgaagatcttgagaaggctttgaacaag 649
Query: 541 ttcagtggctatgaattggatggaagagtgttgactgttaataaggctactccaaaggaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttcagtggctatgaattggatggaagagtgttgactgttaataaggctactccaaaggaa 709
Query: 601 gcacggcctgaacgcccgccacgtacctttggttctggttctggttcccgtgattctggt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gcacggcctgaacgcccgccacgtacctttggttctggttctggttcccgtgattctggt 769
Query: 661 ttaagtgtctatgttggtaacttaccatggagtgttgatactgctcgcctggaagaaatt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ttaagtgtctatgttggtaacttaccatggagtgttgatactgctcgcctggaagaaatt 829
Query: 721 ttcagggaacatggtaatgttgagaatgctcggatagtcatggacagagagacgggtcga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ttcagggaacatggtaatgttgagaatgctcggatagtcatggacagagagacgggtcga 889
Query: 781 tcacgtggttttggctttgtcacaatgtccagtgaagctgatattaatggtgccattgct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 tcacgtggttttggctttgtcacaatgtccagtgaagctgatattaatggtgccattgct 949
Query: 841 gctcttgatggtcagagcttggatgggagaacaatcagggtgagtgttgctgagggaagg 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 gctcttgatggtcagagcttggatgggagaacaatcagggtgagtgttgctgagggaagg 1009
Query: 901 tccggcgggcgtagctccttttga 924
||||||||||||||||||||||||
Sbjct: 1010 tccggcgggcgtagctccttttga 1033
>gnl|LJGI|AV773202 similar to UniRef100_P28644 Cluster: 28 kDa ribonucleoprotein,
chloroplast; n=1; Spinacia oleracea|Rep: 28 kDa
ribonucleoprotein, chloroplast - Spinacia oleracea
(Spinach), partial (24%)
Length = 540
Score = 313 bits (158), Expect = 1e-84
Identities = 181/186 (97%), Gaps = 2/186 (1%)
Strand = Plus / Minus
Query: 738 tgttgagaatgctcggatagtcatggacagagagacgggtcgatcacgtggttttggctt 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tgttgagaatgctcggatagtcatggacagagagacgggtcgatcacgtggttttggctt 481
Query: 798 tgtcacaatgtccagtgaagctgatattaatggtgccattgctgctcttgatggtcagag 857
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 480 tgtcacaatctccagtgaagctgatattaatggtgccattcctgctcttgatggtcagag 421
Query: 858 cttggatgggagaacaatcagggtgagtgttgctgagggaaggt-ccggcggg-cgtagc 915
||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 420 cttggatgggagaaccatcagggtgagtgttgctgagggaaggtaccggcgggccgtagc 361
Query: 916 tccttt 921
||||||
Sbjct: 360 tccttt 355
>gnl|LJGI|TC62706 similar to UniRef100_A7PLZ2 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (74%)
Length = 1464
Score = 95.6 bits (48), Expect = 5e-19
Identities = 141/172 (81%)
Strand = Plus / Plus
Query: 719 ttttcagggaacatggtaatgttgagaatgctcggatagtcatggacagagagacgggtc 778
||||||| ||||||||||| |||| || ||| ||| |||| || ||||| || || |
Sbjct: 857 ttttcagtgaacatggtaaggttgtgagtgcccgggtagtgtatgatagagaaactggac 916
Query: 779 gatcacgtggttttggctttgtcacaatgtccagtgaagctgatattaatggtgccattg 838
|||||||||| |||||||||||||||||||| ||| || || | |||| ||||||||
Sbjct: 917 gatcacgtggctttggctttgtcacaatgtctgatgaggcagaattgaatgatgccattg 976
Query: 839 ctgctcttgatggtcagagcttggatgggagaacaatcagggtgagtgttgc 890
|||| |||||||||||||| |||| ||||| |||||||| |||| ||||||
Sbjct: 977 ctgcccttgatggtcagagtttgggcgggaggacaatcagagtgaatgttgc 1028
Score = 73.8 bits (37), Expect = 2e-12
Identities = 124/153 (81%)
Strand = Plus / Plus
Query: 443 ttgctgaggttatttataataaggccactaaccaaagtcgtgggtttggatttgttatca 502
|||| |||||||||||||| | || ||| |||| || ||||| ||||||||||| | ||
Sbjct: 596 ttgcggaggttatttataacagggaaactgaccagagccgtggctttggatttgtcacca 655
Query: 503 tgagtacggctgaagatcttgagaaggctttgaacaagttcagtggctatgaattggatg 562
||| |||| ||||||| |||||| ||| || | ||||| | |||||||| || | ||
Sbjct: 656 tgaaaacggttgaagatgctgagaaagctgtggataagttaaacggctatgatttcggtg 715
Query: 563 gaagagtgttgactgttaataaggctactccaa 595
| ||| |||||||||||||||||||| ||||||
Sbjct: 716 gtagactgttgactgttaataaggctgctccaa 748