Miyakogusa Predicted Gene

Lj4g3v1389200.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1389200.2 Non Chatacterized Hit- tr|D6WKZ3|D6WKZ3_TRICA
Putative uncharacterized protein OS=Tribolium
castaneu,39.45,2e-16,seg,NULL; ZINC_FINGER_C2H2_1,Zinc finger, C2H2;
ZINC_FINGER_C2H2_2,Zinc finger, C2H2; SUBFAMILY NOT ,CUFF.49158.2
         (921 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|GO026350 weakly similar to UniRef100_Q8VWX5 Cluster: Ri...   345   3e-94
gnl|LJGI|TC63038 similar to UniRef100_A7PLV8 Cluster: Chromosome...    62   6e-09

>gnl|LJGI|GO026350 weakly similar to UniRef100_Q8VWX5 Cluster: Ribosome-like protein;
           n=1; Cucumis sativus|Rep: Ribosome-like protein -
           Cucumis sativus (Cucumber), partial (45%)
          Length = 709

 Score =  345 bits (174), Expect = 3e-94
 Identities = 174/174 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaagaagctcactgcaattgtttcaactttctcgatcttaatactttgttttcaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 atgaagaagctcactgcaattgtttcaactttctcgatcttaatactttgttttcaaatg 160

                                                                       
Query: 61  ctcctccatgttcattcgatacctctcttattaggaaaccaggttgatgaggaatcttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ctcctccatgttcattcgatacctctcttattaggaaaccaggttgatgaggaatcttct 220

                                                                 
Query: 121 ggtcgaaggaatcttaaacaggaaccggagcatactcgtgaagtgcattgctct 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ggtcgaaggaatcttaaacaggaaccggagcatactcgtgaagtgcattgctct 274


>gnl|LJGI|TC63038 similar to UniRef100_A7PLV8 Cluster: Chromosome chr14 scaffold_21,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr14 scaffold_21, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (97%)
          Length = 1377

 Score = 61.9 bits (31), Expect = 6e-09
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 674 cagcaagccgccttcatgaattgtttctgcaccaattttgtgatgctcaca 724
           |||||||||| ||||||||||| ||| |||||||||| |||||||| ||||
Sbjct: 686 cagcaagccggcttcatgaattctttttgcaccaattctgtgatgcacaca 736