Miyakogusa Predicted Gene

Lj4g3v1388310.2
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1388310.2 tr|F4KAP9|F4KAP9_ARATH SAP domain-containing
protein OS=Arabidopsis thaliana GN=At5g63460 PE=4 SV=1,42.42,3e-19,SAP
domain,NULL; DDA1,Ubiquitin ligase, Det1/DDB1-complexing;
SAP,DNA-binding SAP; no description,DN,CUFF.49112.2
         (438 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC58570 similar to UniRef100_A7PHG6 Cluster: Chromosome...   868   0.0  

>gnl|LJGI|TC58570 similar to UniRef100_A7PHG6 Cluster: Chromosome chr17 scaffold_16,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_16, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (67%)
          Length = 843

 Score =  868 bits (438), Expect = 0.0
 Identities = 438/438 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatgcaaatccttcttctagggtttctccatttctcaccaatcttccctctagaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggatgcaaatccttcttctagggtttctccatttctcaccaatcttccctctagaggt 188

                                                                       
Query: 61  ctcttctcttccccggtcatctcttccaatccgggtgggatgcgtgtttatgtatgcgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ctcttctcttccccggtcatctcttccaatccgggtgggatgcgtgtttatgtatgcgat 248

                                                                       
Query: 121 catgagacttcacctccagaggaccaacttattaagacaaaccaacagaatatactgatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 catgagacttcacctccagaggaccaacttattaagacaaaccaacagaatatactgatt 308

                                                                       
Query: 181 cgatcgctcacacttaagaatggatctgatgcttcaaaaaagaggactgctgaaaaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cgatcgctcacacttaagaatggatctgatgcttcaaaaaagaggactgctgaaaaggct 368

                                                                       
Query: 241 ttggatagcagagcttcagctaagagaacaactccaataaatactcgtcaagaaggatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttggatagcagagcttcagctaagagaacaactccaataaatactcgtcaagaaggatca 428

                                                                       
Query: 301 aacagtcaaacacctaatagggactttcacagcttgaccgtggagaggcttcgagctctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aacagtcaaacacctaatagggactttcacagcttgaccgtggagaggcttcgagctctt 488

                                                                       
Query: 361 ttgaaagctaaaggtctttcaaccaaagggaagaaggaggagcttattacgcgtctaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttgaaagctaaaggtctttcaaccaaagggaagaaggaggagcttattacgcgtctaaaa 548

                             
Query: 421 gaagtaagtagttaagca 438
           ||||||||||||||||||
Sbjct: 549 gaagtaagtagttaagca 566