Miyakogusa Predicted Gene

Lj4g3v1386900.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1386900.2 Non Chatacterized Hit- tr|I1MUQ6|I1MUQ6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,85.33,0,seg,NULL;
INTEGRATOR COMPLEX SUBUNIT 11,NULL; CLEAVAGE AND POLYADENYLATION
SPECIFICITY FACTOR,NULL,CUFF.49095.2
         (450 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC76694 similar to UniRef100_A7QKH8 Cluster: Chromosome...   333   5e-91
gnl|LJGI|BP076839 similar to UniRef100_A7QKH8 Cluster: Chromosom...   129   2e-29
gnl|LJGI|TC72201 similar to UniRef100_Q93Z92 Cluster: E3 ubiquit...    88   5e-17
gnl|LJGI|TC69207 similar to UniRef100_Q9LN71 Cluster: E3 ubiquit...    76   2e-13

>gnl|LJGI|TC76694 similar to UniRef100_A7QKH8 Cluster: Chromosome chr2 scaffold_112,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr2 scaffold_112, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (58%)
          Length = 813

 Score =  333 bits (168), Expect = 5e-91
 Identities = 353/414 (85%), Gaps = 3/414 (0%)
 Strand = Plus / Plus

                                                                       
Query: 40  tttatttggtgggtcattggattctattgggtttcagctgatggtcaaactttggcccaa 99
           |||||||||||| | ||||||||||| ||||| || |||| |||||||  ||| ||||||
Sbjct: 3   tttatttggtggattattggattctactgggtatccgctggtggtcaagatttagcccaa 62

                                                                       
Query: 100 gattctcctcaactttactggttatgtatagtcttcctgggttttgatgtcttcttcgtt 159
           ||||||||||| ||||||||| |||||||| |||||||||||||||||||  |||| |||
Sbjct: 63  gattctcctcagctttactggctatgtataatcttcctgggttttgatgtagtctttgtt 122

                                                                       
Query: 160 gttttctgcattgccctggcatgcatcattggtattgctgtttgctgttgtcttccgtgt 219
           ||||||||  |||| ||||| || ||||||||||| || || |||||||||||||| |||
Sbjct: 123 gttttctgtgttgcactggcgtgtatcattggtatcgccgtctgctgttgtcttccatgt 182

                                                                       
Query: 220 atcattgcacttctatatgcagttgcagaccaggaaggggcatcgcaggaagacattgag 279
           ||||||||| |||| |||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 183 atcattgcaattctttatgcagttgcagaccaggaaggggcatccaaggaagacattgag 242

                                                                       
Query: 280 cagttgtcaaaattcaaattccaaagaa---aaagtaatgagaaacttgctggtgacaca 336
           |||||||||| ||| ||||||| |||||   ||||||||||||||| | ||||  |  | 
Sbjct: 243 cagttgtcaagatttaaattccgaagaattgaaagtaatgagaaacctactggcaatgct 302

                                                                       
Query: 337 gaaggacctgttggtggaataatgactgaatgccattctgattcgccaactgaacatatg 396
            ||||||||| ||| ||||||||||| |||||||   ||||||| |||| ||||||| | 
Sbjct: 303 caaggacctggtggaggaataatgaccgaatgcctggctgattcaccaattgaacatgtt 362

                                                                 
Query: 397 ctttctgctgaggatgcggaatgttgcatttgcctatctgcttatgacgatggg 450
           ||| | |  ||||||||||||||||| || ||||| ||| ||||||| ||||||
Sbjct: 363 cttgccgaggaggatgcggaatgttgtatctgcctttcttcttatgatgatggg 416


>gnl|LJGI|BP076839 similar to UniRef100_A7QKH8 Cluster: Chromosome chr2 scaffold_112,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr2 scaffold_112, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (21%)
          Length = 392

 Score =  129 bits (65), Expect = 2e-29
 Identities = 65/65 (100%)
 Strand = Plus / Minus

                                                                       
Query: 386 ctgaacatatgctttctgctgaggatgcggaatgttgcatttgcctatctgcttatgacg 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctgaacatatgctttctgctgaggatgcggaatgttgcatttgcctatctgcttatgacg 333

                
Query: 446 atggg 450
           |||||
Sbjct: 332 atggg 328


>gnl|LJGI|TC72201 similar to UniRef100_Q93Z92 Cluster: E3 ubiquitin-protein ligase
           At4g11680; n=1; Arabidopsis thaliana|Rep: E3
           ubiquitin-protein ligase At4g11680 - Arabidopsis
           thaliana (Mouse-ear cress), partial (35%)
          Length = 822

 Score = 87.7 bits (44), Expect = 5e-17
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                       
Query: 1   atggcaaaacatttggaatcagccaacacaatgttctcttttat 44
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 atggcaaaacatttggaatcagccaacacaatgttctcttttat 822


>gnl|LJGI|TC69207 similar to UniRef100_Q9LN71 Cluster: E3 ubiquitin-protein ligase
           At1g12760; n=2; Arabidopsis thaliana|Rep: E3
           ubiquitin-protein ligase At1g12760 - Arabidopsis
           thaliana (Mouse-ear cress), partial (34%)
          Length = 777

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 4   gcaaaacatttggaatcagccaacacaatgttctcttttatttggtgggtcattggattc 63
           ||||||||||||||||||||||| || ||||| || |||||||||||| | |||||||||
Sbjct: 716 gcaaaacatttggaatcagccaataccatgttttcatttatttggtggattattggattc 775

             
Query: 64  ta 65
           ||
Sbjct: 776 ta 777