Miyakogusa Predicted Gene
- Lj4g3v1386900.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v1386900.1 Non Chatacterized Hit- tr|I1MUQ6|I1MUQ6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,77.81,0,INTEGRATOR
COMPLEX SUBUNIT 11,NULL; CLEAVAGE AND POLYADENYLATION SPECIFICITY
FACTOR,NULL; seg,NULL,CUFF.49095.1
(942 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72201 similar to UniRef100_Q93Z92 Cluster: E3 ubiquit... 963 0.0
gnl|LJGI|TC76694 similar to UniRef100_A7QKH8 Cluster: Chromosome... 333 1e-90
gnl|LJGI|BP076839 similar to UniRef100_A7QKH8 Cluster: Chromosom... 129 3e-29
gnl|LJGI|TC69207 similar to UniRef100_Q9LN71 Cluster: E3 ubiquit... 80 3e-14
>gnl|LJGI|TC72201 similar to UniRef100_Q93Z92 Cluster: E3 ubiquitin-protein ligase
At4g11680; n=1; Arabidopsis thaliana|Rep: E3
ubiquitin-protein ligase At4g11680 - Arabidopsis
thaliana (Mouse-ear cress), partial (35%)
Length = 822
Score = 963 bits (486), Expect = 0.0
Identities = 498/502 (99%)
Strand = Plus / Plus
Query: 35 actccggccggagactcaaccgccgtccgagtctccgacaggcggcgcggttcctgaggc 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actccggccggagactcaaccgccgtccgagtctccgacaggcggcgcggttcctgaggc 380
Query: 95 aggcgagtgggaggaggatgatgcgcgagccgtcgatggtggtgagggagactgcggcgg 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcgagtgggaggaggatgatgcgcgagccgtcgatggtggtgagggagactgcggcgg 440
Query: 155 agcagttggaagaacggcagagcgattgggcgtattcgaagcctgttgtggttcttgata 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcagttggaagaacggcagagcgattgggcgtattcgaagcctgttgtggttcttgata 500
Query: 215 ttctctggaactttgtttttgttgttgcggccgctacggtgttggttttgagccggagtg 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctctggaactttgtttttgttgttgcggccgctacggtgttggttttgagccggagtg 560
Query: 275 agacgccgagtacgcctctcaggttgtggattttggggtacgctttgcagtgtgtggtcc 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agacgccgagtacgcctctcaggttgtggattttggggtacgctttgcagtgtgtggtcc 620
Query: 335 atgttgtctgcgtttgtgttgagtttcggaagcggaggcggcggcgggaacagcccgacg 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgttgtctgcgtttgtgttgagtttcggaagcggaggcggcggcgggaacagcccgacg 680
Query: 395 gtgaagccgttggggggagtggagatttgagctccggttcactggatggctctgggaatt 454
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 681 gtgaagccgttggggggagtggagatttgagctccggttcattggatggttctgggaatt 740
Query: 455 atgcgaatttggggcagcttgaggaccctggcacaagtatggcaaaacatttggaatcag 514
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 atgcgaatttggggcagtttgaggaccctggtacaagtatggcaaaacatttggaatcag 800
Query: 515 ccaacacaatgttctcttttat 536
||||||||||||||||||||||
Sbjct: 801 ccaacacaatgttctcttttat 822
>gnl|LJGI|TC76694 similar to UniRef100_A7QKH8 Cluster: Chromosome chr2 scaffold_112,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_112, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (58%)
Length = 813
Score = 333 bits (168), Expect = 1e-90
Identities = 353/414 (85%), Gaps = 3/414 (0%)
Strand = Plus / Plus
Query: 532 tttatttggtgggtcattggattctattgggtttcagctgatggtcaaactttggcccaa 591
|||||||||||| | ||||||||||| ||||| || |||| ||||||| ||| ||||||
Sbjct: 3 tttatttggtggattattggattctactgggtatccgctggtggtcaagatttagcccaa 62
Query: 592 gattctcctcaactttactggttatgtatagtcttcctgggttttgatgtcttcttcgtt 651
||||||||||| ||||||||| |||||||| ||||||||||||||||||| |||| |||
Sbjct: 63 gattctcctcagctttactggctatgtataatcttcctgggttttgatgtagtctttgtt 122
Query: 652 gttttctgcattgccctggcatgcatcattggtattgctgtttgctgttgtcttccgtgt 711
|||||||| |||| ||||| || ||||||||||| || || |||||||||||||| |||
Sbjct: 123 gttttctgtgttgcactggcgtgtatcattggtatcgccgtctgctgttgtcttccatgt 182
Query: 712 atcattgcacttctatatgcagttgcagaccaggaaggggcatcgcaggaagacattgag 771
||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 183 atcattgcaattctttatgcagttgcagaccaggaaggggcatccaaggaagacattgag 242
Query: 772 cagttgtcaaaattcaaattccaaagaa---aaagtaatgagaaacttgctggtgacaca 828
|||||||||| ||| ||||||| ||||| ||||||||||||||| | |||| | |
Sbjct: 243 cagttgtcaagatttaaattccgaagaattgaaagtaatgagaaacctactggcaatgct 302
Query: 829 gaaggacctgttggtggaataatgactgaatgccattctgattcgccaactgaacatatg 888
||||||||| ||| ||||||||||| ||||||| ||||||| |||| ||||||| |
Sbjct: 303 caaggacctggtggaggaataatgaccgaatgcctggctgattcaccaattgaacatgtt 362
Query: 889 ctttctgctgaggatgcggaatgttgcatttgcctatctgcttatgacgatggg 942
||| | | ||||||||||||||||| || ||||| ||| ||||||| ||||||
Sbjct: 363 cttgccgaggaggatgcggaatgttgtatctgcctttcttcttatgatgatggg 416
>gnl|LJGI|BP076839 similar to UniRef100_A7QKH8 Cluster: Chromosome chr2 scaffold_112,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_112, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 392
Score = 129 bits (65), Expect = 3e-29
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 878 ctgaacatatgctttctgctgaggatgcggaatgttgcatttgcctatctgcttatgacg 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctgaacatatgctttctgctgaggatgcggaatgttgcatttgcctatctgcttatgacg 333
Query: 938 atggg 942
|||||
Sbjct: 332 atggg 328
>gnl|LJGI|TC69207 similar to UniRef100_Q9LN71 Cluster: E3 ubiquitin-protein ligase
At1g12760; n=2; Arabidopsis thaliana|Rep: E3
ubiquitin-protein ligase At1g12760 - Arabidopsis
thaliana (Mouse-ear cress), partial (34%)
Length = 777
Score = 79.8 bits (40), Expect = 3e-14
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 112 atgatgcgcgagccgtcgatggtggtgagggagactgcggcggagcagttggaagaacgg 171
|||||||||||||| ||| || |||| | ||| | || |||||||||||||| || ||
Sbjct: 323 atgatgcgcgagccctcggtgatggttcgcgaggccgcagcggagcagttggaggagagg 382
Query: 172 cagagcgattgggcgtattcgaagcctgttgt 203
|||||||||||||||||||||||||| |||||
Sbjct: 383 cagagcgattgggcgtattcgaagccggttgt 414
Score = 75.8 bits (38), Expect = 4e-13
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 496 gcaaaacatttggaatcagccaacacaatgttctcttttatttggtgggtcattggattc 555
||||||||||||||||||||||| || ||||| || |||||||||||| | |||||||||
Sbjct: 716 gcaaaacatttggaatcagccaataccatgttttcatttatttggtggattattggattc 775
Query: 556 ta 557
||
Sbjct: 776 ta 777