Miyakogusa Predicted Gene
- Lj4g3v1335150.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v1335150.1 tr|I9CIZ0|I9CIZ0_9RHIZ Fusaric acid resistance
protein OS=Methylobacterium sp. GXF4 PE=4
SV=1,35.48,2,seg,NULL,CUFF.49026.1
(313 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC80338 weakly similar to UniRef100_Q2HW87 Cluster: RNA... 315 9e-86
gnl|LJGI|DC598175 121 3e-27
>gnl|LJGI|TC80338 weakly similar to UniRef100_Q2HW87 Cluster: RNA-directed DNA
polymerase (Reverse transcriptase); Zinc finger,
CCHC-type; Peptidase aspartic, active site;
Retrotransposon gag protein; n=1; Medicago
truncatula|Rep: RNA-directed DNA polymerase (Reverse
transcriptase); Zinc finger, CCHC-type; Peptidase
aspartic, active site; Retrotransposon gag protein -
Medicago truncatula (Barrel medic), partial (5%)
Length = 764
Score = 315 bits (159), Expect = 9e-86
Identities = 197/211 (93%), Gaps = 2/211 (0%)
Strand = Plus / Minus
Query: 105 ctgcttccccatccttattaaaccatctaaacctaattcctcaagggctaaactaaaaat 164
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ctgcttcaccatccttattaaaccatctaaacctaattcctcaagggctaaactaaaaat 703
Query: 165 cctaaaatctctcctagtccttgtctctatttttaatcctaactttcaccccctaactct 224
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |
Sbjct: 702 cctaaaatctctcctagtctttgtctctatttttaatcctaaccttcaccccctagcttt 643
Query: 225 cttccatttcataaaacacacccagcatcac--nnnnnnntattttatttcattaaagta 282
||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 642 cttccatttcataaaacacacccagcatcacaaaaaaaaatattttatttcattaaagta 583
Query: 283 ttattatatcacctattaaaccaccatacaa 313
|||||||||||||||||||||||||||||||
Sbjct: 582 ttattatatcacctattaaaccaccatacaa 552
>gnl|LJGI|DC598175
Length = 302
Score = 121 bits (61), Expect = 3e-27
Identities = 109/125 (87%)
Strand = Plus / Plus
Query: 124 aaaccatctaaacctaattcctcaagggctaaactaaaaatcctaaaatctctcctagtc 183
||||||||||| |||||||||| || | ||||||||||||||||||||||||||||| ||
Sbjct: 5 aaaccatctaaccctaattccttaacgtctaaactaaaaatcctaaaatctctcctattc 64
Query: 184 cttgtctctatttttaatcctaactttcaccccctaactctcttccatttcataaaacac 243
|| |||||||| |||| |||||| ||||||||||| || ||||| ||| |||||||||
Sbjct: 65 tttatctctattattaaccctaaccttcaccccctacctttcttcatttttataaaacac 124
Query: 244 accca 248
||||
Sbjct: 125 cccca 129