Miyakogusa Predicted Gene

Lj4g3v1259130.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1259130.1 tr|B9H0P1|B9H0P1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_712927 PE=4
SV=1,44.83,8e-19,coiled-coil,NULL,CUFF.48716.1
         (292 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC57276 similar to UniRef100_Q9SAA1 Cluster: F25C20.9; ...   192   8e-49

>gnl|LJGI|TC57276 similar to UniRef100_Q9SAA1 Cluster: F25C20.9; n=2; Arabidopsis
           thaliana|Rep: F25C20.9 - Arabidopsis thaliana (Mouse-ear
           cress), partial (27%)
          Length = 1070

 Score =  192 bits (97), Expect = 8e-49
 Identities = 163/185 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatagcgtagttgattctctaaataatgcctatcaagatttggttgatgcggcagca 60
           ||||| |||||||||||||||||||||||||||||||||||||| |||| ||| || |||
Sbjct: 130 atggacagcgtagttgattctctaaataatgcctatcaagattttgttgctgcagccgca 189

                                                                       
Query: 61  aatgtattagaagccaaagaaaatgttggtgcccttgaaacaacagccacagatacggct 120
           |  ||||||||||||||||||||||   |||||||| |||||||||| |||||||| |||
Sbjct: 190 accgtattagaagccaaagaaaatgccagtgcccttaaaacaacagcaacagatactgct 249

                                                                       
Query: 121 ccagaaaacttcaagcagaagttaattttgtttaaagtagcatgtgatcaagctgaggag 180
           |  ||||||||||| |||||||     ||||||| |||||||||||||||||||||||||
Sbjct: 250 cttgaaaacttcaaacagaagtgggaattgtttagagtagcatgtgatcaagctgaggag 309

                
Query: 181 tttgt 185
           |||||
Sbjct: 310 tttgt 314



 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 222 agctctttcccatccctcagctccttttgatg 253
           ||||||||||||||||||||||||||||||||
Sbjct: 507 agctctttcccatccctcagctccttttgatg 538