Miyakogusa Predicted Gene

Lj4g3v1259080.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1259080.1 Non Chatacterized Hit- tr|I1J9V8|I1J9V8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.32459
PE,69.34,0,Sec16_C,NULL; Sec16,Sec16, central conserved domain;
RGPR-RELATED,COPII coat assembly protein, Sec16,CUFF.48719.1
         (4200 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC79881                                                      248   2e-64
gnl|LJGI|TC75471                                                       82   3e-14

>gnl|LJGI|TC79881 
          Length = 534

 Score =  248 bits (125), Expect = 2e-64
 Identities = 146/153 (95%)
 Strand = Plus / Plus

                                                                        
Query: 4048 ttctatcccaccacaaaaatgaatgaagctaagcctctaggggaagctttgggaatgcca 4107
            |||||||||||| |  | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1    ttctatcccaccccccacatgaatgaagctaagcctctaggggaagctttgggtatgcca 60

                                                                        
Query: 4108 ccatcaacatttatgccagatgatgcttctttaatgcacactcctgtgaagagtgggagt 4167
            ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 61   ccatccacatttatgccagatgatgcttctttaatgcacactcccgtgaagagtgggagt 120

                                             
Query: 4168 tttggagatcttcatgaggttgaactttgagca 4200
            |||||||||||||||||||||||||||||||||
Sbjct: 121  tttggagatcttcatgaggttgaactttgagca 153


>gnl|LJGI|TC75471 
          Length = 430

 Score = 81.8 bits (41), Expect = 3e-14
 Identities = 128/157 (81%)
 Strand = Plus / Plus

                                                                        
Query: 1336 caacaaaatacttcaagctcctttgggtcagttccatcgtacaataaagcaaaccccgac 1395
            ||||||||||| || || |||||||| |||||| | | ||||||||||| ||||| ||| 
Sbjct: 155  caacaaaatacctctagttcctttggatcagttgcgttgtacaataaagtaaaccacgat 214

                                                                        
Query: 1396 catgggttggctaatggaactcttgaagtgcaaaactttgctccgagtgggaactatggt 1455
            ||||| || |||||||||||| |||||    |||  |||| ||| |||||||||   |||
Sbjct: 215  catggttttgctaatggaacttttgaaccaaaaagttttgttcctagtgggaacatcggt 274

                                                 
Query: 1456 caacattttaattattcgaacacacagtttgatgaac 1492
            || || ||||||||||| | |||| ||||||||||||
Sbjct: 275  cagcagtttaattattcaagcacaaagtttgatgaac 311