Miyakogusa Predicted Gene

Lj4g3v1237990.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v1237990.1 CUFF.48705.1
         (1263 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV422778 similar to UniRef100_A7R2D2 Cluster: Chromosom...    98   2e-19
gnl|LJGI|TC74581 similar to UniRef100_A7R2D2 Cluster: Chromosome...    66   6e-10

>gnl|LJGI|AV422778 similar to UniRef100_A7R2D2 Cluster: Chromosome undetermined
           scaffold_419, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_419,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (9%)
          Length = 460

 Score = 97.6 bits (49), Expect = 2e-19
 Identities = 82/93 (88%)
 Strand = Plus / Plus

                                                                       
Query: 181 ccagccatacctcagccaccaacaccacatgagcctatggagttcttatcaaggtcatgg 240
           |||||||||||| ||||||| ||||| | |||||| |||||||| ||||| |||||||||
Sbjct: 64  ccagccatacctgagccaccgacaccccttgagcccatggagtttttatccaggtcatgg 123

                                            
Query: 241 agcctctctgctgcggagatttcaaaggctctt 273
           || ||||||||| | || |||||||||||||||
Sbjct: 124 agtctctctgcttcagaaatttcaaaggctctt 156


>gnl|LJGI|TC74581 similar to UniRef100_A7R2D2 Cluster: Chromosome undetermined
            scaffold_419, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome undetermined scaffold_419, whole
            genome shotgun sequence - Vitis vinifera (Grape), partial
            (25%)
          Length = 489

 Score = 65.9 bits (33), Expect = 6e-10
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                        
Query: 970  aagatcaaaagcaaacacattggaggagctttctctaaaaagcataaatgtgtggtttat 1029
            ||||||||||| || ||  ||||||||||||||||  ||||| ||||||||||||| |||
Sbjct: 33   aagatcaaaagtaagcatgttggaggagctttctcctaaaagaataaatgtgtggtatat 92

                 
Query: 1030 ggagt 1034
            |||||
Sbjct: 93   ggagt 97