Miyakogusa Predicted Gene
- Lj4g3v1154490.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v1154490.2 tr|F2CPM3|F2CPM3_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2 SV=1,58.9,2e-17,no
description,NULL; no description,Homeodomain-like;
RESPONSE_REGULATORY,Signal transduction respon,CUFF.48591.2
(1617 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC80121 similar to UniRef100_A7PCE1 Cluster: Chromosome... 1110 0.0
gnl|LJGI|BW630747 similar to UniRef100_A7PCE1 Cluster: Chromosom... 361 9e-99
gnl|LJGI|TC64637 similar to UniRef100_A7PCE1 Cluster: Chromosome... 319 3e-86
gnl|LJGI|BP042681 similar to UniRef100_A7PCE1 Cluster: Chromosom... 274 2e-72
gnl|LJGI|TC69198 weakly similar to UniRef100_A7PCE1 Cluster: Chr... 96 8e-19
>gnl|LJGI|TC80121 similar to UniRef100_A7PCE1 Cluster: Chromosome chr2 scaffold_11,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_11, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (27%)
Length = 737
Score = 1110 bits (560), Expect = 0.0
Identities = 569/572 (99%)
Strand = Plus / Plus
Query: 1 atggttttcactgccaatgatttacaagaatggaaggactttcccaagggactcaaggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 atggttttcactgccaatgatttacaagaatggaaggactttcccaagggactcaaggtt 225
Query: 61 cttctccttgagggagacagtgcttctgctgctgagttaaaagataaacttgaggccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cttctccttgagggagacagtgcttctgctgctgagttaaaagataaacttgaggccatg 285
Query: 121 gactataatgtttctacattctgtgatgagaatgaagccttgtcagcaatctcaagtaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gactataatgtttctacattctgtgatgagaatgaagccttgtcagcaatctcaagtaga 345
Query: 181 ccagaaggcttccacattgccattgtggaggtgagtttaagcagttgccagggaggtttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ccagaaggcttccacattgccattgtggaggtgagtttaagcagttgccagggaggtttc 405
Query: 241 aaattccttcagaatgccaaggacttgccaaccattatgacttcaaacaaccattgcctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaattccttcagaatgccaaggacttgccaaccattatgacttcaaacaaccattgcctg 465
Query: 301 gacaccatgatgaagtgcatagcgcttggtgcagttgagttcctcagcaaaccactctcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gacaccatgatgaagtgcatagcgcttggtgcagttgagttcctcagcaaaccactctcc 525
Query: 361 gaggacaagctcaaaaatatctggcagcatgtggttcacaaggcattcaatgctggggca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaggacaagctcaaaaatatctggcagcatgtggttcacaaggcattcaatgctggggca 585
Query: 421 agtgtcctttctgaatcactaaaacctgtcaaagaatctgtcatgtccatgttggagcgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 586 agtgtcctttctgaatcactaaaacctgtcaaagaatctgtcatgtccatgttagagcgc 645
Query: 481 caaacggaccaagaacaacacgaaggtagagtctcaattgatttagagaatgtatccagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 caaacggaccaagaacaacacgaaggtagagtctcaattgatttagagaatgtatccagg 705
Query: 541 atcactgacaacaataaccatgagcagtatcc 572
||||||||||| |||||||||||||||||||
Sbjct: 706 atcactgacaaacataaccatgagcagtatcc 737
>gnl|LJGI|BW630747 similar to UniRef100_A7PCE1 Cluster: Chromosome chr2 scaffold_11,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_11, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (11%)
Length = 454
Score = 361 bits (182), Expect = 9e-99
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 1 atggttttcactgccaatgatttacaagaatggaaggactttcccaagggactcaaggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atggttttcactgccaatgatttacaagaatggaaggactttcccaagggactcaaggtt 332
Query: 61 cttctccttgagggagacagtgcttctgctgctgagttaaaagataaacttgaggccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cttctccttgagggagacagtgcttctgctgctgagttaaaagataaacttgaggccatg 392
Query: 121 gactataatgtttctacattctgtgatgagaatgaagccttgtcagcaatctcaagtaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gactataatgtttctacattctgtgatgagaatgaagccttgtcagcaatctcaagtaga 452
Query: 181 cc 182
||
Sbjct: 453 cc 454
>gnl|LJGI|TC64637 similar to UniRef100_A7PCE1 Cluster: Chromosome chr2 scaffold_11,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_11, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (29%)
Length = 750
Score = 319 bits (161), Expect = 3e-86
Identities = 386/461 (83%)
Strand = Plus / Plus
Query: 1 atggttttcactgccaatgatttacaagaatggaaggactttcccaagggactcaaggtt 60
||||||| |||||||| ||||||||| ||||||| || ||||| || || || || |
Sbjct: 136 atggtttgcactgccagtgatttacagcaatggaaagattttccaaaagggcttcgggct 195
Query: 61 cttctccttgagggagacagtgcttctgctgctgagttaaaagataaacttgaggccatg 120
||||| ||||| ||||| || | ||||||| | ||| ||| || || ||||||||||||
Sbjct: 196 cttcttcttgaaggagatagcggttctgctaccgagataagagcaaagcttgaggccatg 255
Query: 121 gactataatgtttctacattctgtgatgagaatgaagccttgtcagcaatctcaagtaga 180
||||||| ||||| ||| |||| |||||||||| ||||||||||||||||| |||
Sbjct: 256 gactatattgtttttactttctacaatgagaatgaggccttgtcagcaatctctagtgat 315
Query: 181 ccagaaggcttccacattgccattgtggaggtgagtttaagcagttgccagggaggtttc 240
|| ||||||||||| ||||| | | |||||||||| |||||| |||||| ||||||
Sbjct: 316 cctgaaggcttccatgttgccgtggcggaggtgagtacaagcagcaaccagggtggtttc 375
Query: 241 aaattccttcagaatgccaaggacttgccaaccattatgacttcaaacaaccattgcctg 300
||||||||| |||||| ||||||||||| |||||||||||||| |||| || ||||||
Sbjct: 376 aaattccttgagaatgtgaaggacttgcctaccattatgacttccaacagtcaatgcctg 435
Query: 301 gacaccatgatgaagtgcatagcgcttggtgcagttgagttcctcagcaaaccactctcc 360
| || |||||||||||||| |||||||| |||||||| ||||||| |||||||||||
Sbjct: 436 aatacaatgatgaagtgcatcgcgcttggcgcagttgaattcctcactaaaccactctct 495
Query: 361 gaggacaagctcaaaaatatctggcagcatgtggttcacaaggcattcaatgctggggca 420
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct: 496 gaggataagctcaaaaatatttggcagcatgtagttcacaaggcattcaatgctgggaca 555
Query: 421 agtgtcctttctgaatcactaaaacctgtcaaagaatctgt 461
| || | ||||||||||||| ||||||||||||||||||
Sbjct: 556 aatgctccgtctgaatcactaagacctgtcaaagaatctgt 596
>gnl|LJGI|BP042681 similar to UniRef100_A7PCE1 Cluster: Chromosome chr2 scaffold_11,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_11, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 316
Score = 274 bits (138), Expect = 2e-72
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 atggttttcactgccaatgatttacaagaatggaaggactttcccaagggactcaaggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 atggttttcactgccaatgatttacaagaatggaaggactttcccaagggactcaaggtt 238
Query: 61 cttctccttgagggagacagtgcttctgctgctgagttaaaagataaacttgaggccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cttctccttgagggagacagtgcttctgctgctgagttaaaagataaacttgaggccatg 298
Query: 121 gactataatgtttctaca 138
||||||||||||||||||
Sbjct: 299 gactataatgtttctaca 316
>gnl|LJGI|TC69198 weakly similar to UniRef100_A7PCE1 Cluster: Chromosome chr2
scaffold_11, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr2 scaffold_11, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (10%)
Length = 997
Score = 95.6 bits (48), Expect = 8e-19
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 1452 ttatccggcagaggaagttgttgacaaggttgtgaaggaggcaataaataagccatggct 1511
||||||||| ||||| || || ||||||||||||||||||||||| | |||||||||||
Sbjct: 170 ttatccggcggaggaggtggtggacaaggttgtgaaggaggcaatgagcaagccatggct 229
Query: 1512 acctttaccattaggcctcaaacctccttcca 1543
|| || || ||||||||||||||||||||||
Sbjct: 230 ccccttgcccttaggcctcaaacctccttcca 261