Miyakogusa Predicted Gene
- Lj4g3v1107610.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v1107610.1 Non Chatacterized Hit- tr|B9RV23|B9RV23_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,32,7e-16,zf-CCCH,Zinc finger, CCCH-type; no description,NULL; ZINC
FINGER (CCCH-TYPE) FAMILY PROTEIN,NULL; CC,CUFF.48463.1
(1149 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78910 homologue to UniRef100_A7PC73 Cluster: Chromoso... 874 0.0
gnl|LJGI|TC80082 similar to UniRef100_Q93ZP3 Cluster: At1g32359/... 771 0.0
gnl|LJGI|DC595081 86 6e-16
gnl|LJGI|AV410333 76 5e-13
>gnl|LJGI|TC78910 homologue to UniRef100_A7PC73 Cluster: Chromosome chr2 scaffold_11,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_11, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 889
Score = 874 bits (441), Expect = 0.0
Identities = 444/445 (99%)
Strand = Plus / Plus
Query: 86 atagctggccgggggaccaggcggattgggcgacggaagacgagtaccggtactggaacg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atagctggccgggggaccaggcggattgggcgacggaagacgagtaccggtactggaacg 504
Query: 146 gcaacgaagacacggcgccttcgaacggtgacgggaggcagtcgcagtcgcggtcgggga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcaacgaagacacggcgccttcgaacggtgacgggaggcagtcgcagtcgcggtcgggga 564
Query: 206 gcgagccgccgagcaagaaggctcggggctcgtctgcgacgtcgtcgtcggcgtcgcaag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcgagccgccgagcaagaaggctcggggctcgtctgcgacgtcgtcgtcggcgtcgcaag 624
Query: 266 agcggtcgaaggcgatcgggaagatgtttttcaagacgaagctgtgctgcaagttcaggg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcggtcgaaggcgatcgggaagatgtttttcaagacgaagctgtgctgcaagttcaggg 684
Query: 326 cagggacgtgcccgtacgtcaccaattgcaacttcgcccacagcatcgaggagctccgcc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagggacgtgcccgtacgtcaccaattgcaacttcgcccacagcatcgaggagctccgcc 744
Query: 386 gtccgccgccgaattggcaggagattgtggcggcgcatgaggaggagaaggcggttctca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtccgccgccgaattggcaggagattgtggcggcgcatgaggaggagaaggcggttctca 804
Query: 446 tgtcggagcctagggaggagtttcagatccccaccatcgggtcctatgcaggggacgtgt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgtcggagcctagggaggagtttcagatccccaccatcgggtcctatgcaggggacgtgt 864
Query: 506 cgcagaggtcttacaaggggcggca 530
|| ||||||||||||||||||||||
Sbjct: 865 cggagaggtcttacaaggggcggca 889
Score = 113 bits (57), Expect = 2e-24
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 1 atggattacggtcgagacgggaacgtggtgcaaattatcaccaccggcggcggtggc 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atggattacggtcgagacgggaacgtggtgcaaattatcaccaccggcggcggtggc 416
>gnl|LJGI|TC80082 similar to UniRef100_Q93ZP3 Cluster: At1g32359/F27G20.10; n=1;
Arabidopsis thaliana|Rep: At1g32359/F27G20.10 -
Arabidopsis thaliana (Mouse-ear cress), partial (20%)
Length = 753
Score = 771 bits (389), Expect = 0.0
Identities = 401/405 (99%)
Strand = Plus / Plus
Query: 745 tcttctgctgggaatggagctaatgtcaagccttctaattggaaaaccaggatttgtaat 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 tcttctgctgggaatggagctaatgtcaagccttctaattggaaaaccaggatttgtaat 75
Query: 805 aagtgggagatgactgggtattgtccctttggcaacaaatgccattttgctcatggtgct 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 aagtgggagatgactgggtattgtccctttggcaacaaatgccattttgctcatggtgct 135
Query: 865 acagaactgcacagatatggtggtgggcttatggagggagaaagcagagacactgcatcc 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 acagaactgcacagatatggtggtgggcttatggagggagaaagcagagacactgcatcc 195
Query: 925 gctattgcggctgacactaaacagggtgtgccttcaaagactcttgctgataatgtggtt 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gctattgcggctgacactaaacagggtgtgccttcaaagactcttgctgataatgtggtt 255
Query: 985 gcatcagctactcctattgctcactcagatatttatcatattggagtcccatcacagagg 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 256 gcatcagctactcctattgctcactcagatatttatcatattggagtcccatcaccgagg 315
Query: 1045 ccttccattgtgctgcagaggccagggcaaagaactcttcagaagtggaaaggtcccgat 1104
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 316 ccttcccttgtgctgcagaggccagggccaagaactcttcagaagtggaaaggtcccgat 375
Query: 1105 aaaatcagtagaatatacggtgactggatagatgacatcgaatga 1149
|||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aaaatccgtagaatatacggtgactggatagatgacatcgaatga 420
>gnl|LJGI|DC595081
Length = 347
Score = 85.7 bits (43), Expect = 6e-16
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 1 atggattacggtcgagacgggaacgtggtgcaaattatcacca 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atggattacggtcgagacgggaacgtggtgcaaattatcacca 347
>gnl|LJGI|AV410333
Length = 258
Score = 75.8 bits (38), Expect = 5e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 atggattacggtcgagacgggaacgtggtgcaaattat 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 221 atggattacggtcgagacgggaacgtggtgcaaattat 258