Miyakogusa Predicted Gene
- Lj4g3v1037490.4
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v1037490.4 tr|Q0JFE3|Q0JFE3_ORYSJ Os04g0110600 protein
OS=Oryza sativa subsp. japonica GN=Os04g0110600 PE=4
SV=,82.69,3e-18,ZF_RANBP2_2,Zinc finger, RanBP2-type; ZINC FINGER
PROTEIN,NULL; Zinc finger domain,Zinc finger, RanB,CUFF.48442.4
(1143 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC65805 similar to UniRef100_A7QDZ2 Cluster: Chromosome... 1170 0.0
gnl|LJGI|BW628856 homologue to UniRef100_A7QDZ2 Cluster: Chromos... 549 e-155
gnl|LJGI|TC79156 similar to UniRef100_A7QDZ2 Cluster: Chromosome... 414 e-115
gnl|LJGI|AV772971 289 2e-77
>gnl|LJGI|TC65805 similar to UniRef100_A7QDZ2 Cluster: Chromosome chr4 scaffold_83,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_83, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (43%)
Length = 757
Score = 1170 bits (590), Expect = 0.0
Identities = 590/590 (100%)
Strand = Plus / Plus
Query: 180 ttgggagtgcagcagttgcaacaaccgcaactacgctttcagatcattctgcaatcgatg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ttgggagtgcagcagttgcaacaaccgcaactacgctttcagatcattctgcaatcgatg 227
Query: 240 caagcaaccccgtctcctcgttgataccaaaacccctgctgattccaagtggctccctcg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 caagcaaccccgtctcctcgttgataccaaaacccctgctgattccaagtggctccctcg 287
Query: 300 tattggtgattggatctgcaccggttgcactaacaacaattatgcatcaagagagaagtg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tattggtgattggatctgcaccggttgcactaacaacaattatgcatcaagagagaagtg 347
Query: 360 caagaagtgtggacaaccaaaggaggtagcagccatgccagcagttgcaatgaccggagc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 caagaagtgtggacaaccaaaggaggtagcagccatgccagcagttgcaatgaccggagc 407
Query: 420 atctttccccccttatccgcattatgtttccagggctccaggaggaccagcacaaaagat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atctttccccccttatccgcattatgtttccagggctccaggaggaccagcacaaaagat 467
Query: 480 gaacattggattcaatggattgatcggaaatggtgtgctaccgcagccactgcatttaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gaacattggattcaatggattgatcggaaatggtgtgctaccgcagccactgcatttaaa 527
Query: 540 ctccaattggcctgttaccggagcagataagtatggtgtccatccagtttccatgtggct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ctccaattggcctgttaccggagcagataagtatggtgtccatccagtttccatgtggct 587
Query: 600 acctggtggaaattatagttctggacatccttatgtaaacccctccagccaggacctatc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 acctggtggaaattatagttctggacatccttatgtaaacccctccagccaggacctatc 647
Query: 660 tattgcgaaaggatggcgcaatggggactggatctgtaactgtggtttccataactactc 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tattgcgaaaggatggcgcaatggggactggatctgtaactgtggtttccataactactc 707
Query: 720 atcacgctcacagtgtaaaaagtgtgatgcttttccacctgcacttggga 769
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 atcacgctcacagtgtaaaaagtgtgatgcttttccacctgcacttggga 757
>gnl|LJGI|BW628856 homologue to UniRef100_A7QDZ2 Cluster: Chromosome chr4 scaffold_83,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_83, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (31%)
Length = 478
Score = 549 bits (277), Expect = e-155
Identities = 277/277 (100%)
Strand = Plus / Plus
Query: 180 ttgggagtgcagcagttgcaacaaccgcaactacgctttcagatcattctgcaatcgatg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttgggagtgcagcagttgcaacaaccgcaactacgctttcagatcattctgcaatcgatg 261
Query: 240 caagcaaccccgtctcctcgttgataccaaaacccctgctgattccaagtggctccctcg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caagcaaccccgtctcctcgttgataccaaaacccctgctgattccaagtggctccctcg 321
Query: 300 tattggtgattggatctgcaccggttgcactaacaacaattatgcatcaagagagaagtg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tattggtgattggatctgcaccggttgcactaacaacaattatgcatcaagagagaagtg 381
Query: 360 caagaagtgtggacaaccaaaggaggtagcagccatgccagcagttgcaatgaccggagc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 caagaagtgtggacaaccaaaggaggtagcagccatgccagcagttgcaatgaccggagc 441
Query: 420 atctttccccccttatccgcattatgtttccagggct 456
|||||||||||||||||||||||||||||||||||||
Sbjct: 442 atctttccccccttatccgcattatgtttccagggct 478
>gnl|LJGI|TC79156 similar to UniRef100_A7QDZ2 Cluster: Chromosome chr4 scaffold_83,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_83, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 461
Score = 414 bits (209), Expect = e-115
Identities = 227/233 (97%)
Strand = Plus / Plus
Query: 911 tcccttcttatcccggtataaactcaagtaccgctccaagtttgccaatgccccaattgc 970
||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||
Sbjct: 1 tcccttcttatcccggtataaactcaagtaccgctcccagtttgcccatgcccccattgc 60
Query: 971 ttccacctcaagtttctactccagcactccttggaaaaggagcgaagcaatggcgtagtg 1030
|||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 ttccccctccagtttctactccagcactccttggaaaaggagcgaagccatggcgtagtg 120
Query: 1031 gagactggatgtgcacaaattgcaacaatcataattatgcttccagactacactgtaaca 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagactggatgtgcacaaattgcaacaatcataattatgcttccagactacactgtaaca 180
Query: 1091 ggtgtaaaacccaacgagtggcccccatgcaacccgtcaatgttgtgtaatgt 1143
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtgtaaaacccaacgagtggcccccatgcaacccgtcaatgttgtgtaatgt 233
>gnl|LJGI|AV772971
Length = 526
Score = 289 bits (146), Expect = 2e-77
Identities = 299/328 (91%), Gaps = 19/328 (5%)
Strand = Plus / Minus
Query: 835 acaaatgatcggcagcacacatttacaagtttagagcaagcagtggggaacagcgcagat 894
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 526 acaaatgatcggcagcacacatttacaagtttagagcaagcactggggaacagcgcagat 467
Query: 895 cctaaacctggagtattcccttcttatcccggtataaactcaagtaccgctccaagtttg 954
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 466 cctaaacctggagtattcccttcttatcccggtataaactcaagtaccgctcccagtttg 407
Query: 955 ccaatgccccaattgcttccacctca-agtttctac-tccagcact-ccttggaa-aagg 1010
|||||||||||||||||||||||||| ||||| ||| ||||||||| |||||||| ||||
Sbjct: 406 ccaatgccccaattgcttccacctcacagtttatacttccagcactgccttggaacaagg 347
Query: 1011 -agcgaagca-atggcg-tagtggaga-ctggatgtgc-acaaattg-caacaatcat-a 1063
| ||||||| |||||| ||||||||| |||||||||| |||||||| |||| ||||| |
Sbjct: 346 aaacgaagcacatggcgctagtggagagctggatgtgcgacaaattgccaaccatcatca 287
Query: 1064 attatgctt-ccagacta-cactgt--aacaggtgtaaaa--cccaacgagtggc-cccc 1116
||||||||| ||||| || |||||| | ||||||||||| || |||||||||| ||||
Sbjct: 286 attatgcttaccagattaccactgtacaccaggtgtaaaatcccaaacgagtggcgcccc 227
Query: 1117 atg-caacccgtcaatgttgtgtaatgt 1143
||| || |||||| ||||||||||||||
Sbjct: 226 atgccaccccgtccatgttgtgtaatgt 199