Miyakogusa Predicted Gene
- Lj4g3v0949910.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0949910.1 tr|F2XX47|F2XX47_LITCN Succinate dehydrogenase
OS=Litchi chinensis PE=2
SV=1,87.18,0.00000000000009,Succ_DH_flav_C,Fumarate
reductase/succinate dehydrogenase flavoprotein-like,
C-terminal,CUFF.48212.1
(123 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59852 similar to UniRef100_A7PUW0 Cluster: Chromosome... 244 1e-64
gnl|LJGI|AV778936 similar to UniRef100_A7PUW0 Cluster: Chromosom... 135 6e-32
gnl|LJGI|BP041578 similar to UniRef100_A6NKT8 Cluster: Uncharact... 66 5e-11
gnl|LJGI|TC75164 similar to UniRef100_A7PUW0 Cluster: Chromosome... 60 3e-09
>gnl|LJGI|TC59852 similar to UniRef100_A7PUW0 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (37%)
Length = 823
Score = 244 bits (123), Expect = 1e-64
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 1 atgaaacacactgtgggatactgggaaaatgagaaggtgcggttagactacaggccggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atgaaacacactgtgggatactgggaaaatgagaaggtgcggttagactacaggccggtg 547
Query: 61 cacatgaatactttggatgatgaggctgaaccagtccctccttttgctcgtgtttattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cacatgaatactttggatgatgaggctgaaccagtccctccttttgctcgtgtttattaa 607
Query: 121 tat 123
|||
Sbjct: 608 tat 610
>gnl|LJGI|AV778936 similar to UniRef100_A7PUW0 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (14%)
Length = 465
Score = 135 bits (68), Expect = 6e-32
Identities = 102/111 (91%), Gaps = 3/111 (2%)
Strand = Plus / Minus
Query: 16 ggatactgggaaaatgagaaggtgcggttagactacaggccggtgca-catgaatacttt 74
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 281 ggatactgggaaaatgagaaggtgcggttagactacaggccggtgcaccatgcatacttt 222
Query: 75 ggatgatgaggctgaaccagtccct--ccttttgctcgtgtttattaatat 123
|||||||||||||| ||| |||||| ||| ||||| ||||||||| ||||
Sbjct: 221 ggatgatgaggctggacccgtccctcccctcttgcttgtgtttatttatat 171
>gnl|LJGI|BP041578 similar to UniRef100_A6NKT8 Cluster: Uncharacterized protein
ENSP00000347017; n=1; Homo sapiens|Rep: Uncharacterized
protein, partial (2%)
Length = 461
Score = 65.9 bits (33), Expect = 5e-11
Identities = 82/89 (92%), Gaps = 7/89 (7%)
Strand = Plus / Minus
Query: 1 atgaaacacac-tgtgggatac-tgggaaaatgagaag-gtgcggttagact-acag-gc 55
||||||||||| |||||||||| ||||||||||||||| ||||||||||||| |||| ||
Sbjct: 370 atgaaacacacgtgtgggatacgtgggaaaatgagaagngtgcggttagactcacagcgc 311
Query: 56 cggtgcac-atgaatac-tttggatgatg 82
|||||||| |||||||| |||||||||||
Sbjct: 310 cggtgcactatgaatacttttggatgatg 282
>gnl|LJGI|TC75164 similar to UniRef100_A7PUW0 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (49%)
Length = 815
Score = 60.0 bits (30), Expect = 3e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 atgaaacacactgtgggatactgggaaaat 30
||||||||||||||||||||||||||||||
Sbjct: 786 atgaaacacactgtgggatactgggaaaat 815