Miyakogusa Predicted Gene

Lj4g3v0771140.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v0771140.1 Non Chatacterized Hit- tr|Q2QZQ1|Q2QZQ1_ORYSJ
Retrotransposon protein, putative, Ty3-gypsy subclass
,31.88,0.00000000000002,POPLD,POPLD,CUFF.48051.1
         (1179 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC70344 weakly similar to UniRef100_A7PJ62 Cluster: Chr...   557   e-158
gnl|LJGI|TC79346 similar to UniRef100_A7PJ62 Cluster: Chromosome...   250   2e-65

>gnl|LJGI|TC70344 weakly similar to UniRef100_A7PJ62 Cluster: Chromosome chr12
            scaffold_18, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome chr12 scaffold_18, whole genome
            shotgun sequence - Vitis vinifera (Grape), partial (13%)
          Length = 578

 Score =  557 bits (281), Expect = e-158
 Identities = 314/325 (96%)
 Strand = Plus / Plus

                                                                        
Query: 855  tatgaaattatacttcaaagagcattcctctggtaaatggggaatgcagataccagagga 914
            ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1    tatgagattatacttcaaagagcattcctctggtaattggggaatgcagataccagagga 60

                                                                        
Query: 915  ttcaattgccagagcgtctcaccggtggcctattggctttgtcacaacagcttcggttca 974
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 61   ttcaattgccagagcgtctcaccgatggcctattggctttgtcacaacagcttcagttca 120

                                                                        
Query: 975  aggaagcaagaggctcgtagcagagggattttgtgaggcagttttactgtctcatttaag 1034
            ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 121  aggaagcaagaggctagtagcagagggattttgcgaggcagttttactgtctcatttaag 180

                                                                        
Query: 1035 agaggaacagtggaaggagatgcctgtgaaacaaaggaggagggaaatatacgtacttgt 1094
            ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 181  agaggaacagtggaaggagttgcctgtgaaacaaaggaggagggaaatatatgtacttgt 240

                                                                        
Query: 1095 ctggaatttacgatccgtagcatatagacttgctctagcttctgttgttctggaaaatca 1154
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  ccggaatttacgatccgtagcatatagacttgctctagcttctgttgttctggaaaatca 300

                                     
Query: 1155 aaaaactgacgttgagttcttttaa 1179
            | ||| |||||||||||||||||||
Sbjct: 301  agaaaatgacgttgagttcttttaa 325


>gnl|LJGI|TC79346 similar to UniRef100_A7PJ62 Cluster: Chromosome chr12 scaffold_18,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr12 scaffold_18, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (4%)
          Length = 386

 Score =  250 bits (126), Expect = 2e-65
 Identities = 133/134 (99%), Gaps = 1/134 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1047 gaaggagatgcctgtgaaac-aaaggaggagggaaatatacgtacttgtctggaatttac 1105
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1    gaaggagatgcctgtgaaaccaaaggaggagggaaatatacgtacttgtctggaatttac 60

                                                                        
Query: 1106 gatccgtagcatatagacttgctctagcttctgttgttctggaaaatcaaaaaactgacg 1165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   gatccgtagcatatagacttgctctagcttctgttgttctggaaaatcaaaaaactgacg 120

                          
Query: 1166 ttgagttcttttaa 1179
            ||||||||||||||
Sbjct: 121  ttgagttcttttaa 134