Miyakogusa Predicted Gene

Lj4g3v0685290.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v0685290.2 tr|A9SF97|A9SF97_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_233181,49.54,3e-17,CYTOCHROME C OXIDASE POLYPEPTIDE
VIA,Cytochrome c oxidase, subunit VIa; COX6A,Cytochrome c oxidase,
,CUFF.48307.2
         (312 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC64090 similar to UniRef100_A7QZH3 Cluster: Chromosome...   618   e-177
gnl|LJGI|FS329374 similar to UniRef100_A7QZH3 Cluster: Chromosom...   448   e-126
gnl|LJGI|FS355678 similar to UniRef100_A9SF97 Cluster: Predicted...    90   9e-18

>gnl|LJGI|TC64090 similar to UniRef100_A7QZH3 Cluster: Chromosome chr7 scaffold_275,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr7 scaffold_275, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (74%)
          Length = 679

 Score =  618 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgtcggcactcgtgcgatctgctcttctccgaaccaccctccgcggcggcgctcgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  atggcgtcggcactcgtgcgatctgctcttctccgaaccaccctccgcggcggcgctcgc 123

                                                                       
Query: 61  ggtggctctctcactcccaagcgaaacttctcttcctctggtggtcacgatgatgcatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ggtggctctctcactcccaagcgaaacttctcttcctctggtggtcacgatgatgcatat 183

                                                                       
Query: 121 gagacggcgaaatgggagaagatcacatatctaggcattgcttcgtgcactgctttagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gagacggcgaaatgggagaagatcacatatctaggcattgcttcgtgcactgctttagct 243

                                                                       
Query: 181 gcttattgtctatcaaagggtcatccacactatgaggagcctccggcatacccatatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gcttattgtctatcaaagggtcatccacactatgaggagcctccggcatacccatatttg 303

                                                                       
Query: 241 catatccgcaacaaggaattcccatggggtcctgatgggctatttgaaaccaagcacgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catatccgcaacaaggaattcccatggggtcctgatgggctatttgaaaccaagcacgag 363

                       
Query: 301 caccactaggag 312
           ||||||||||||
Sbjct: 364 caccactaggag 375


>gnl|LJGI|FS329374 similar to UniRef100_A7QZH3 Cluster: Chromosome chr7 scaffold_275,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr7 scaffold_275, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (51%)
          Length = 691

 Score =  448 bits (226), Expect = e-126
 Identities = 226/226 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgtcggcactcgtgcgatctgctcttctccgaaccaccctccgcggcggcgctcgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  atggcgtcggcactcgtgcgatctgctcttctccgaaccaccctccgcggcggcgctcgc 119

                                                                       
Query: 61  ggtggctctctcactcccaagcgaaacttctcttcctctggtggtcacgatgatgcatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ggtggctctctcactcccaagcgaaacttctcttcctctggtggtcacgatgatgcatat 179

                                                                       
Query: 121 gagacggcgaaatgggagaagatcacatatctaggcattgcttcgtgcactgctttagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gagacggcgaaatgggagaagatcacatatctaggcattgcttcgtgcactgctttagct 239

                                                         
Query: 181 gcttattgtctatcaaagggtcatccacactatgaggagcctccgg 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gcttattgtctatcaaagggtcatccacactatgaggagcctccgg 285


>gnl|LJGI|FS355678 similar to UniRef100_A9SF97 Cluster: Predicted protein; n=1;
           Physcomitrella patens subsp. patens|Rep: Predicted
           protein - Physcomitrella patens subsp. patens, partial
           (13%)
          Length = 644

 Score = 89.7 bits (45), Expect = 9e-18
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                        
Query: 268 ggtcctgatgggctatttgaaaccaagcacgagcaccactaggag 312
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggtcctgatgggctatttgaaaccaagcacgagcaccactaggag 231