Miyakogusa Predicted Gene
- Lj4g3v0669750.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0669750.1 Non Chatacterized Hit- tr|I1NDI0|I1NDI0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.52584 PE,73.09,0,RNA
recognition motif,RNA recognition motif domain; NUCLEAR TRANSPORT
FACTOR 2 (NTF2) FAMILY PROTEIN,CUFF.47899.1
(1395 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59549 similar to UniRef100_A7P2E7 Cluster: Chromosome... 1296 0.0
gnl|LJGI|AV422316 similar to UniRef100_A7QI03 Cluster: Chromosom... 955 0.0
gnl|LJGI|TC61680 similar to UniRef100_A7QI03 Cluster: Chromosome... 632 e-180
gnl|LJGI|AV407453 weakly similar to UniRef100_A7P2E7 Cluster: Ch... 601 e-171
gnl|LJGI|FS340434 similar to UniRef100_A7QYW7 Cluster: Chromosom... 68 2e-10
gnl|LJGI|TC63849 similar to UniRef100_A7QYW7 Cluster: Chromosome... 68 2e-10
>gnl|LJGI|TC59549 similar to UniRef100_A7P2E7 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (31%)
Length = 777
Score = 1296 bits (654), Expect = 0.0
Identities = 657/658 (99%)
Strand = Plus / Plus
Query: 1 atggctgcgactgatggagctcccacccctcagatggttggcaatgcttttgtggagcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 atggctgcgactgatggagctcccacccctcagatggttggcaatgcttttgtggagcag 179
Query: 61 tactactcaattctccatcatgatccggagcaggttcacaggttttaccatgagacgagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tactactcaattctccatcatgatccggagcaggttcacaggttttaccatgagacgagt 239
Query: 121 atcctcagtcgacctgaagaagatggtactatgaccacggtcactactactgtcgaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atcctcagtcgacctgaagaagatggtactatgaccacggtcactactactgtcgaaata 299
Query: 181 aataaaaagatactctctcaggattacaagagctttagggtggagattctgagtgctgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aataaaaagatactctctcaggattacaagagctttagggtggagattctgagtgctgat 359
Query: 241 tctcagccttcatataaggaaggtgtaatagttgcagtgactggctgcttaactggaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tctcagccttcatataaggaaggtgtaatagttgcagtgactggctgcttaactggaact 419
Query: 301 gacaatatgaagcggaagtttgctcagtcatttttcctagctccacaggacaagggctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gacaatatgaagcggaagtttgctcagtcatttttcctagctccacaggacaagggctac 479
Query: 361 tttgttttgaatgatgtttttagatatgttgatgagtacaagtctgttgatattgagtct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tttgttttgaatgatgtttttagatatgttgatgagtacaagtctgttgatattgagtct 539
Query: 421 gtgccatcacgtgatgctgatgaaattactctatctgatgcttttgcccccgagcctgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gtgccatcacgtgatgctgatgaaattactctatctgatgcttttgcccccgagcctgag 599
Query: 481 cccaatcatgttcctgaagacattcctcctagtcaaactgctattgctgaaactgatgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cccaatcatgttcctgaagacattcctcctagtcaaactgctattgctgaaactgatgct 659
Query: 541 agcatcaggaaagaagtgtctcaaccactggagaatggaaaattatcagttactgaaaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 agcatcaggaaagaagtgtctcaaccactggagaatggaaaattatcagttactgaaaag 719
Query: 601 gtgattcctgttaatcatgttgaagagtcaaatcatcaggaacatcactcaagctctg 658
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 720 gtgattcctgttaatcatgttgaagagccaaatcatcaggaacatcactcaagctctg 777
>gnl|LJGI|AV422316 similar to UniRef100_A7QI03 Cluster: Chromosome chr17 scaffold_101,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_101, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 482
Score = 955 bits (482), Expect = 0.0
Identities = 482/482 (100%)
Strand = Plus / Plus
Query: 632 atcatcaggaacatcactcaagctctgagaaagctgattctaatacacaggaggatgctc 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcatcaggaacatcactcaagctctgagaaagctgattctaatacacaggaggatgctc 60
Query: 692 ctaagaagtcttttgcatccattgtcaatgcattgaatgaaaatgctgctcccttccatg 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaagaagtcttttgcatccattgtcaatgcattgaatgaaaatgctgctcccttccatg 120
Query: 752 tgaggacttcccctatgaaacctgtagaacagcctcgtgtctctagcaagcctgcatctg 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaggacttcccctatgaaacctgtagaacagcctcgtgtctctagcaagcctgcatctg 180
Query: 812 aagctcaagctcctatcgctgatgtcctactggaaaagaataatgagaatgcaggtaagg 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagctcaagctcctatcgctgatgtcctactggaaaagaataatgagaatgcaggtaagg 240
Query: 872 ctcatgccatatttgttgcgaatttacctatgaatgctaccgtagagcaactggaacggg 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctcatgccatatttgttgcgaatttacctatgaatgctaccgtagagcaactggaacggg 300
Query: 932 cttttgtggaatttgggcccattaaaaccaatggtattcaagttagaagtaataagcaac 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttttgtggaatttgggcccattaaaaccaatggtattcaagttagaagtaataagcaac 360
Query: 992 aaggatcttgttttggttttgtggaatttgaatctgctgcgtcaatgcaaagtgcacttg 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaggatcttgttttggttttgtggaatttgaatctgctgcgtcaatgcaaagtgcacttg 420
Query: 1052 aggccgctgttatattggacaaccgcagactatccattgaagaaaggcgagctaataatg 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aggccgctgttatattggacaaccgcagactatccattgaagaaaggcgagctaataatg 480
Query: 1112 ac 1113
||
Sbjct: 481 ac 482
>gnl|LJGI|TC61680 similar to UniRef100_A7QI03 Cluster: Chromosome chr17 scaffold_101,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_101, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (20%)
Length = 861
Score = 632 bits (319), Expect = e-180
Identities = 319/319 (100%)
Strand = Plus / Plus
Query: 859 aatgcaggtaaggctcatgccatatttgttgcgaatttacctatgaatgctaccgtagag 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 aatgcaggtaaggctcatgccatatttgttgcgaatttacctatgaatgctaccgtagag 115
Query: 919 caactggaacgggcttttgtggaatttgggcccattaaaaccaatggtattcaagttaga 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 caactggaacgggcttttgtggaatttgggcccattaaaaccaatggtattcaagttaga 175
Query: 979 agtaataagcaacaaggatcttgttttggttttgtggaatttgaatctgctgcgtcaatg 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 agtaataagcaacaaggatcttgttttggttttgtggaatttgaatctgctgcgtcaatg 235
Query: 1039 caaagtgcacttgaggccgctgttatattggacaaccgcagactatccattgaagaaagg 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 caaagtgcacttgaggccgctgttatattggacaaccgcagactatccattgaagaaagg 295
Query: 1099 cgagctaataatgacagggccagatatccatcaggacgcggtggataccgaaatgacaga 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cgagctaataatgacagggccagatatccatcaggacgcggtggataccgaaatgacaga 355
Query: 1159 aatgatagcttcaggggcc 1177
|||||||||||||||||||
Sbjct: 356 aatgatagcttcaggggcc 374
Score = 339 bits (171), Expect = 3e-92
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 1225 tacaacggcaggaatgattttgagaggcgaaatgagttctctggccgaccacgaggtggc 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tacaacggcaggaatgattttgagaggcgaaatgagttctctggccgaccacgaggtggc 481
Query: 1285 aataatatgggacgtaacaatggagaaactgcgccaaggagttatcagaatggtcagact 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aataatatgggacgtaacaatggagaaactgcgccaaggagttatcagaatggtcagact 541
Query: 1345 ggtcagaatggaggaagagtcgctcgccaaccggtgaaagctcagtaaagc 1395
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ggtcagaatggaggaagagtcgctcgccaaccggtgaaagctcagtaaagc 592
Score = 105 bits (53), Expect = 7e-22
Identities = 56/57 (98%)
Strand = Plus / Minus
Query: 582 attatcagttactgaaaaggtgattcctgttaatcatgttgaagagtcaaatcatca 638
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 58 attatcagttactgaaaaggtgattcctgttaatcatgttgaagagccaaatcatca 2
>gnl|LJGI|AV407453 weakly similar to UniRef100_A7P2E7 Cluster: Chromosome chr1
scaffold_5, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr1 scaffold_5, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (23%)
Length = 395
Score = 601 bits (303), Expect = e-171
Identities = 303/303 (100%)
Strand = Plus / Plus
Query: 1 atggctgcgactgatggagctcccacccctcagatggttggcaatgcttttgtggagcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 atggctgcgactgatggagctcccacccctcagatggttggcaatgcttttgtggagcag 152
Query: 61 tactactcaattctccatcatgatccggagcaggttcacaggttttaccatgagacgagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tactactcaattctccatcatgatccggagcaggttcacaggttttaccatgagacgagt 212
Query: 121 atcctcagtcgacctgaagaagatggtactatgaccacggtcactactactgtcgaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 atcctcagtcgacctgaagaagatggtactatgaccacggtcactactactgtcgaaata 272
Query: 181 aataaaaagatactctctcaggattacaagagctttagggtggagattctgagtgctgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aataaaaagatactctctcaggattacaagagctttagggtggagattctgagtgctgat 332
Query: 241 tctcagccttcatataaggaaggtgtaatagttgcagtgactggctgcttaactggaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tctcagccttcatataaggaaggtgtaatagttgcagtgactggctgcttaactggaact 392
Query: 301 gac 303
|||
Sbjct: 393 gac 395
>gnl|LJGI|FS340434 similar to UniRef100_A7QYW7 Cluster: Chromosome undetermined
scaffold_257, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_257,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (34%)
Length = 749
Score = 67.9 bits (34), Expect = 2e-10
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 337 ctagctccacaggacaagggctactttgttttgaatgatgtttttagatatgttgatg 394
||||||||||| || || || |||||||| |||||||||||||| |||||||||||||
Sbjct: 442 ctagctccacaagagaaaggatactttgtattgaatgatgttttcagatatgttgatg 499
>gnl|LJGI|TC63849 similar to UniRef100_A7QYW7 Cluster: Chromosome undetermined
scaffold_257, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_257,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (32%)
Length = 970
Score = 67.9 bits (34), Expect = 2e-10
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 337 ctagctccacaggacaagggctactttgttttgaatgatgtttttagatatgttgatg 394
||||||||||| || || || |||||||| |||||||||||||| |||||||||||||
Sbjct: 560 ctagctccacaagagaaaggatactttgtattgaatgatgttttcagatatgttgatg 617