Miyakogusa Predicted Gene
- Lj4g3v0620370.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0620370.1 Non Chatacterized Hit- tr|D7E0U3|D7E0U3_NOSA0
Putative signal transduction protein with CBS domains
,34.9,5e-17,Domain in cystathionine beta-synthase and ot,Cystathionine
beta-synthase, core; CBS,Cystathionine be,CUFF.47678.1
(720 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58252 similar to UniRef100_A7PLE7 Cluster: Chromosome... 1304 0.0
gnl|LJGI|TC62695 homologue to emb|AJ235987.1|MLI235987 Mentzelli... 56 3e-07
gnl|LJGI|TC76047 similar to UniRef100_A7PLE7 Cluster: Chromosome... 54 1e-06
gnl|LJGI|TC69120 similar to UniRef100_A7PLE7 Cluster: Chromosome... 54 1e-06
>gnl|LJGI|TC58252 similar to UniRef100_A7PLE7 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (77%)
Length = 1236
Score = 1304 bits (658), Expect = 0.0
Identities = 658/658 (100%)
Strand = Plus / Plus
Query: 63 tgctcctccgcttcggtcactatctccgtccctattcccccaaacccattctccggttcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tgctcctccgcttcggtcactatctccgtccctattcccccaaacccattctccggttcc 222
Query: 123 atcctccgccgtccccaaacggcgtcgctcctctcactccgctcggttccgccttgcctc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 atcctccgccgtccccaaacggcgtcgctcctctcactccgctcggttccgccttgcctc 282
Query: 183 cggcccaagcgcaaccgtcgattcggttccgcgcgagaatggaacttatacagttgctga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cggcccaagcgcaaccgtcgattcggttccgcgcgagaatggaacttatacagttgctga 342
Query: 243 tttcatgactaagaagcagaatttgcatgttgccaaaaccaccaccaccgttgatgaagc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tttcatgactaagaagcagaatttgcatgttgccaaaaccaccaccaccgttgatgaagc 402
Query: 303 tcttgaagcacttgtcaaaaacagaatcagtggtcttccagtagttgatgatgactggaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tcttgaagcacttgtcaaaaacagaatcagtggtcttccagtagttgatgatgactggaa 462
Query: 363 tctggttggagttgtttcagattatgacttgttagcaattgattccatatcaggtggtaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tctggttggagttgtttcagattatgacttgttagcaattgattccatatcaggtggtaa 522
Query: 423 tcaaaacgattcaaacttattccctgacgtcaatagttcttggaaaacattcaatgagat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tcaaaacgattcaaacttattccctgacgtcaatagttcttggaaaacattcaatgagat 582
Query: 483 acaaaagcttcttagtaaaactaatggccaagttgttggagacttgatgactccaactcc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 acaaaagcttcttagtaaaactaatggccaagttgttggagacttgatgactccaactcc 642
Query: 543 ccttgttgttcaagaatcgactaatctggaggatgctgcaaggctgttgcttgaaacaaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ccttgttgttcaagaatcgactaatctggaggatgctgcaaggctgttgcttgaaacaaa 702
Query: 603 atatcgtcgactgcctgtagttgatagagatggaaagctggttggacttattacaagggg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 atatcgtcgactgcctgtagttgatagagatggaaagctggttggacttattacaagggg 762
Query: 663 aaatatagttaaggcagcattgctgtcaaaacgtgctggtgataggctctcatagttt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 aaatatagttaaggcagcattgctgtcaaaacgtgctggtgataggctctcatagttt 820
>gnl|LJGI|TC62695 homologue to emb|AJ235987.1|MLI235987 Mentzellia lindleyi 18S rRNA
gene, partial (5%)
Length = 701
Score = 56.0 bits (28), Expect = 3e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 358 tggaatctggttggagttgtttcagattatgacttgttagcaattgattccatatcaggt 417
||||| || ||||| |||||||||||||| |||||||||||| | || || |||||||||
Sbjct: 259 tggaacctagttggtgttgtttcagattacgacttgttagcactggactctatatcaggt 318
>gnl|LJGI|TC76047 similar to UniRef100_A7PLE7 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (78%)
Length = 848
Score = 54.0 bits (27), Expect = 1e-06
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 347 ttgatgatgactggaatctggttggagttgtttcagattatgacttgttagcaattgatt 406
|||||||| | ||||| || ||| | |||||||||||||| |||||||||||| | || |
Sbjct: 418 ttgatgataagtggaacctagtttgtgttgtttcagattacgacttgttagcactggact 477
Query: 407 ccatatcaggt 417
| |||||||||
Sbjct: 478 ctatatcaggt 488
>gnl|LJGI|TC69120 similar to UniRef100_A7PLE7 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (78%)
Length = 1048
Score = 54.0 bits (27), Expect = 1e-06
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 347 ttgatgatgactggaatctggttggagttgtttcagattatgacttgttagcaattgatt 406
|||||||| | ||||| || ||| | |||||||||||||| |||||||||||| | || |
Sbjct: 480 ttgatgataagtggaacctagtttgtgttgtttcagattacgacttgttagcactggact 539
Query: 407 ccatatcaggt 417
| |||||||||
Sbjct: 540 ctatatcaggt 550