Miyakogusa Predicted Gene
- Lj4g3v0620070.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v0620070.1 Non Chatacterized Hit- tr|I1P156|I1P156_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,60.76,1e-17,RING/U-box,NULL; ARM repeat,Armadillo-type fold; no
description,Zinc finger, RING/FYVE/PHD-type; no ,CUFF.47650.1
(1246 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC77091 similar to UniRef100_A7P9L6 Cluster: Chromosome... 1398 0.0
gnl|LJGI|TC78185 similar to UniRef100_A7P9L6 Cluster: Chromosome... 1051 0.0
>gnl|LJGI|TC77091 similar to UniRef100_A7P9L6 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (51%)
Length = 961
Score = 1398 bits (705), Expect = 0.0
Identities = 705/705 (100%)
Strand = Plus / Plus
Query: 542 gcgccgccatcgccgccgatttggataaaattggttacctctcggttttactctctcatc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gcgccgccatcgccgccgatttggataaaattggttacctctcggttttactctctcatc 63
Query: 602 aatctctcgacgtccgagtcaactcagccgcgctcatcgagatggtcgtcgccgggactc 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aatctctcgacgtccgagtcaactcagccgcgctcatcgagatggtcgtcgccgggactc 123
Query: 662 actcggctgacctccgatctcaggtgagcagcgtcgaaggaatccacgacggcgtggtgg 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 actcggctgacctccgatctcaggtgagcagcgtcgaaggaatccacgacggcgtggtgg 183
Query: 722 agattctccgaagcccgatctcgtacccgcgcgcgctcaaggtcggcgtaaaagctctct 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 agattctccgaagcccgatctcgtacccgcgcgcgctcaaggtcggcgtaaaagctctct 243
Query: 782 tcgcgctgtgcctggtgaagcagtcacggcagagagcggttgccgccggagcgccggcgg 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tcgcgctgtgcctggtgaagcagtcacggcagagagcggttgccgccggagcgccggcgg 303
Query: 842 tgctaatcgaccgtctcgcggactttgaaaagtgcgatgcggagagggctttggcgacgg 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgctaatcgaccgtctcgcggactttgaaaagtgcgatgcggagagggctttggcgacgg 363
Query: 902 tggagctcctctgccgggttccggcgggttgtgctgagttcgccggccacgcgctgacgg 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tggagctcctctgccgggttccggcgggttgtgctgagttcgccggccacgcgctgacgg 423
Query: 962 tgccgatgctggtgaagataatattgaaaatatcagaccgtgcgacggagtacgccgccg 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgccgatgctggtgaagataatattgaaaatatcagaccgtgcgacggagtacgccgccg 483
Query: 1022 gggcgcttctttcgctgtgctcggaatcggagcggttacagatggaggcggtggcggcgg 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gggcgcttctttcgctgtgctcggaatcggagcggttacagatggaggcggtggcggcgg 543
Query: 1082 gggtgctgactcagcttctcctccttgtgcagagcgattgcacggagagagcgaagagga 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gggtgctgactcagcttctcctccttgtgcagagcgattgcacggagagagcgaagagga 603
Query: 1142 aggcgcaactgttgctgaagcttcttcgggattcgtggccgcaagattccatcggaaatt 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aggcgcaactgttgctgaagcttcttcgggattcgtggccgcaagattccatcggaaatt 663
Query: 1202 cggacgattttgcgtgcagccagcttgtggtggtgcctttttgag 1246
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cggacgattttgcgtgcagccagcttgtggtggtgcctttttgag 708
>gnl|LJGI|TC78185 similar to UniRef100_A7P9L6 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (40%)
Length = 673
Score = 1051 bits (530), Expect = 0.0
Identities = 530/530 (100%)
Strand = Plus / Plus
Query: 1 atgcgtggttgtttagaaccattagatttggggattcagatcccttaccactacaggtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 atgcgtggttgtttagaaccattagatttggggattcagatcccttaccactacaggtgc 203
Query: 61 ccaatctcacttgagctcatgcgtgacccggtaacggtgtgtaccggtcaaacctacgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ccaatctcacttgagctcatgcgtgacccggtaacggtgtgtaccggtcaaacctacgac 263
Query: 121 cgatccagtatcgagtcgtgggttaacaccggtaacaccacatgcccggtcacgcgtgcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgatccagtatcgagtcgtgggttaacaccggtaacaccacatgcccggtcacgcgtgcg 323
Query: 181 cctctaaccgagttcacactaatcccaaatcacaccctccgacgcctcatccaagagtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctctaaccgagttcacactaatcccaaatcacaccctccgacgcctcatccaagagtgg 383
Query: 241 tgcgtcgccaaccgcgctttcggcgtggagcgaatccccactcccaaacagccagcagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcgtcgccaaccgcgctttcggcgtggagcgaatccccactcccaaacagccagcagaa 443
Query: 301 cccgctctcgtccgctccttgctcaaccaaatatcctccgcttcagcttcaactcaccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cccgctctcgtccgctccttgctcaaccaaatatcctccgcttcagcttcaactcaccac 503
Query: 361 cgcctcaactcgctccgacgactcagacaactcgctcgtgactcggactacaaccgctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgcctcaactcgctccgacgactcagacaactcgctcgtgactcggactacaaccgctca 563
Query: 421 ctcattgcctcccacgacgtccgccgcatcgttctccggatcttcgataaccgctcctcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctcattgcctcccacgacgtccgccgcatcgttctccggatcttcgataaccgctcctcc 623
Query: 481 gatgagctgagtcacgaatcgctcgctctactcgtcatgtttcccctcgc 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gatgagctgagtcacgaatcgctcgctctactcgtcatgtttcccctcgc 673